C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tubulin, epsilon 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000074935 TUBE1 9606 - 6:112070777-112087529 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000368657 TUBE1-002 112079400-112087479 retained_intron
  ENST00000368662 TUBE1-001 112070777-112087513 protein_coding
  ENST00000441191 TUBE1-003 112075999-112085701 processed_transcript
  ENST00000603621 TUBE1-009 112083916-112087498 retained_intron
  ENST00000603651 TUBE1-010 112072782-112075151 retained_intron
  ENST00000603722 TUBE1-008 112086814-112087529 retained_intron
  ENST00000604689 TUBE1-011 112075085-112078694 retained_intron
  ENST00000604743 TUBE1-007 112074710-112087498 nonsense_mediated_decay
  ENST00000604814 TUBE1-004 112071265-112085694 processed_transcript
  ENST00000604967 TUBE1-005 112076435-112087466 nonsense_mediated_decay
  ENST00000605457 TUBE1-006 112071329-112087509 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000368657ENST00000368662ENST00000441191ENST00000604689ENST00000604743ENST00000604814ENST00000605457
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000368657 N/A N/A N/A 6.503±0.00 6.749±0.00 1.829±0.00 4.453±0.00 14.080±0.00 N/A 5.359±0.00 N/A 7.986±0.00 1.212±0.00 11.424±0.00
ENST00000368662 2.293±0.00 1.177±0.00 N/A 0.755±0.00 1.091±0.00 1.456±0.80 2.869±0.00 4.697±0.00 3.882±0.00 2.248±0.00 N/A 5.994±1.13 3.109±0.09 8.117±0.00
ENST00000441191 3.682±0.00 N/A N/A N/A N/A 3.553±0.20 N/A N/A N/A N/A N/A N/A 2.102±0.00 29.576±0.00
ENST00000604689 0.556±0.00 N/A N/A N/A 0.374±0.00 N/A 0.692±0.16 1.010±0.00 N/A N/A 0.317±0.00 1.099±0.00 N/A N/A
ENST00000604743 N/A N/A 1.788±0.00 N/A N/A 1.328±0.00 2.393±0.00 6.928±0.00 4.809±0.00 N/A 0.446±0.00 N/A 0.648±0.00 N/A
ENST00000604814 N/A N/A N/A N/A N/A N/A 1.217±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000605457 2.533±0.00 1.807±0.00 N/A 1.531±0.00 1.458±0.00 2.756±0.00 2.118±0.00 N/A 1.762±0.00 N/A N/A N/A 0.913±0.45 8.869±1.36

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000242 TAS pericentriolar material
GO:0003924 IEA GTPase activity
GO:0005200 TAS structural constituent of cytoskeleton
GO:0005525 IEA GTP binding
GO:0005874 IEA microtubule
GO:0006184 IEA GTP catabolic process
GO:0007017 IEA microtubule-based process
GO:0007098 TAS centrosome cycle
GO:0043234 IEA protein complex
GO:0051258 IEA protein polymerization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043982 tube1 tubulin, epsilon 1 protein_coding Danio_rerio
ENSDARG00000096620 tube1 tubulin, epsilon 1 protein_coding Danio_rerio
ENSMUSG00000019845 Tube1 epsilon-tubulin 1 protein_coding Mus_musculus

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