C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tubby like protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000078246 TULP3 9606 + 12:2877223-2941140 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000397132 TULP3-004 2890907-2941130 protein_coding
  ENST00000448120 TULP3-001 2890897-2941140 protein_coding
  ENST00000538354 TULP3-003 2890891-2939560 nonsense_mediated_decay
  ENST00000538704 TULP3-007 2937711-2940338 protein_coding
  ENST00000540184 TULP3-006 2877223-2934562 nonsense_mediated_decay
  ENST00000541678 TULP3-008 2937678-2940338 protein_coding
  ENST00000544943 TULP3-005 2890887-2939345 protein_coding
  ENST00000545331 TULP3-002 2890891-2939788 nonsense_mediated_decay
  ENST00000610453 TULP3-201 2890904-2939507 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000397132ENST00000448120ENST00000538354ENST00000544943ENST00000545331
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000397132 N/A N/A N/A N/A N/A N/A N/A N/A 5.605±0.00 1.725±0.00 N/A N/A N/A
ENST00000448120 8.840±0.00 3.643±0.00 1.313±0.00 2.673±1.33 3.753±1.21 4.803±4.26 7.506±0.00 1.617±0.80 2.578±1.47 2.427±0.00 7.738±5.71 6.038±1.35 6.573±0.79
ENST00000538354 N/A N/A N/A N/A N/A N/A N/A N/A 0.822±0.00 N/A N/A N/A N/A
ENST00000544943 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.021±0.00 N/A N/A N/A
ENST00000545331 N/A N/A 0.751±0.00 N/A N/A N/A N/A N/A N/A N/A 7.173±0.00 2.403±0.00 3.680±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001841 IEA neural tube formation
GO:0001843 IEA neural tube closure
GO:0005515 IPI protein binding
GO:0005546 NAS phosphatidylinositol-4,5-bisphosphate binding
GO:0005576 IEA extracellular region
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005886 IDA plasma membrane
GO:0005929 IDA cilium
GO:0005930 IEA axoneme
GO:0006355 NAS regulation of transcription, DNA-templated
GO:0007186 NAS G-protein coupled receptor signaling pathway
GO:0007420 IEA brain development
GO:0008277 IDA regulation of G-protein coupled receptor protein signaling pathway
GO:0008589 IEA regulation of smoothened signaling pathway
GO:0009952 IEA anterior/posterior pattern specification
GO:0019899 IPI enzyme binding
GO:0021904 IEA dorsal/ventral neural tube patterning
GO:0021914 IEA negative regulation of smoothened signaling pathway involved in ventral spinal cord patterning
GO:0021915 IEA neural tube development
GO:0021953 IEA central nervous system neuron differentiation
GO:0030991 IDA intraciliary transport particle A
GO:0031076 IEA embryonic camera-type eye development
GO:0032403 IDA protein complex binding
GO:0035091 IDA phosphatidylinositol binding
GO:0042733 IEA embryonic digit morphogenesis
GO:0045879 IDA negative regulation of smoothened signaling pathway
GO:0048702 IEA embryonic neurocranium morphogenesis
GO:0060173 IEA limb development
GO:0060348 IEA bone development
GO:0060434 IEA bronchus morphogenesis
GO:0060831 IEA smoothened signaling pathway involved in dorsal/ventral neural tube patterning
GO:0061548 IEA ganglion development
GO:0072372 IDA primary cilium
GO:0097546 IDA ciliary base
GO:1901621 IEA negative regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063672 TULP3 tubby like protein 3 protein_coding Danio_rerio
ENSMUSG00000001521 Tulp3 tubby-like protein 3 protein_coding Mus_musculus

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