C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: capicua transcriptional repressor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000079432 CIC 9606 + 19:42268537-42295797 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000160740 CIC-005 42284020-42295796 protein_coding
  ENST00000571033 CIC-003 42294460-42295005 retained_intron
  ENST00000571942 CIC-008 42269224-42272216 protein_coding
  ENST00000572681 CIC-002 42268537-42295796 protein_coding
  ENST00000573349 CIC-007 42293607-42295110 protein_coding
  ENST00000575287 CIC-004 42293751-42295135 nonsense_mediated_decay
  ENST00000575354 CIC-001 42284665-42295797 protein_coding
  ENST00000575839 CIC-009 42279992-42286893 processed_transcript
  ENST00000576505 CIC-006 42293657-42295534 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000160740ENST00000572681ENST00000573349ENST00000575354ENST00000576505
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000160740 N/A N/A N/A 3.048±0.00 N/A 2.923±0.00 3.037±0.00 1.250±0.00 N/A 2.178±1.39 2.844±0.00 10.771±0.00 N/A N/A
ENST00000572681 6.921±0.00 4.399±0.00 N/A 1.375±0.00 2.670±1.99 2.711±0.00 0.606±0.00 1.592±0.00 N/A N/A 2.260±1.79 7.370±4.19 2.588±0.89 4.692±1.99
ENST00000573349 N/A N/A N/A N/A N/A 1.997±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575354 10.296±0.00 14.628±0.00 0.661±0.00 4.506±3.47 4.561±2.66 8.022±0.00 1.779±0.00 5.687±0.00 1.772±0.68 8.031±0.00 2.806±1.55 18.476±19.70 8.214±0.82 18.354±2.02
ENST00000576505 N/A N/A N/A N/A N/A N/A N/A 5.534±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000287 CIL_000287_0001 CGP 19:42247572-42295797
CIL_0005V7 CIL_0005V7_0001 CGP 19:42268537-42303546

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0048286 IEA lung alveolus development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055502 cicb capicua homolog b (Drosophila) protein_coding Danio_rerio
ENSDARG00000071150 cica capicua homolog a (Drosophila) protein_coding Danio_rerio
ENSMUSG00000005442 Cic capicua homolog (Drosophila) protein_coding Mus_musculus

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