C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: farnesyl-diphosphate farnesyltransferase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000079459 FDFT1 9606 + 8:11795573-11839309 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000220584 FDFT1-001 11802611-11839309 protein_coding
  ENST00000443614 FDFT1-002 11802739-11838783 protein_coding
  ENST00000446331 FDFT1-005 11802643-11839210 processed_transcript
  ENST00000525283 FDFT1-013 11802741-11831667 nonsense_mediated_decay
  ENST00000525551 FDFT1-015 11803095-11803500 processed_transcript
  ENST00000525571 FDFT1-016 11802768-11803832 processed_transcript
  ENST00000525607 FDFT1-003 11802741-11838839 nonsense_mediated_decay
  ENST00000525777 FDFT1-018 11809256-11838613 protein_coding
  ENST00000525900 FDFT1-006 11802766-11838905 protein_coding
  ENST00000525954 FDFT1-010 11808417-11838967 retained_intron
  ENST00000527045 FDFT1-014 11802784-11803815 retained_intron
  ENST00000528643 FDFT1-011 11809144-11839114 protein_coding
  ENST00000528729 FDFT1-021 11821781-11831596 retained_intron
  ENST00000528812 FDFT1-007 11803012-11838960 protein_coding
  ENST00000529464 FDFT1-004 11802746-11831581 nonsense_mediated_decay
  ENST00000529521 FDFT1-022 11830280-11831794 retained_intron
  ENST00000530337 FDFT1-012 11802239-11821818 protein_coding
  ENST00000530664 FDFT1-009 11807943-11838840 protein_coding
  ENST00000531249 FDFT1-019 11808510-11826096 retained_intron
  ENST00000531733 FDFT1-017 11808490-11809976 retained_intron
  ENST00000532266 FDFT1-020 11808791-11830275 nonsense_mediated_decay
  ENST00000538689 FDFT1-201 11795573-11839304 protein_coding
  ENST00000615631 FDFT1-202 11795573-11839304 protein_coding
  ENST00000618539 FDFT1-203 11795573-11839304 protein_coding
  ENST00000622850 FDFT1-204 11803089-11839304 protein_coding
  ENST00000623368 FDFT1-205 11802611-11839304 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000220584ENST00000443614ENST00000525283ENST00000525777ENST00000525900ENST00000525954ENST00000528812ENST00000529464ENST00000530337ENST00000530664ENST00000531249ENST00000615631ENST00000622850
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000220584 N/A 7.413±0.00 N/A 12.805±1.17 5.182±2.98 N/A 3.353±2.25 18.631±0.00 8.054±6.16 9.836±4.52 N/A 19.433±6.42 14.386±3.67 14.996±0.00
ENST00000443614 15.526±0.00 13.689±0.00 N/A 21.474±0.00 N/A 9.909±0.00 1.482±0.00 N/A 2.674±0.00 30.112±0.00 21.152±0.00 13.573±0.85 21.161±4.18 42.548±1.16
ENST00000525283 20.609±0.00 16.353±0.00 N/A 50.639±0.00 35.210±0.00 18.235±0.00 N/A N/A N/A 32.351±0.00 N/A N/A N/A 56.445±0.00
ENST00000525777 N/A N/A 1.650±0.00 N/A 3.239±0.00 N/A N/A N/A 3.577±0.00 9.924±0.00 N/A 6.674±0.00 N/A N/A
ENST00000525900 N/A 11.934±0.00 N/A 9.570±0.00 3.462±0.00 N/A 7.217±3.84 15.041±9.10 35.147±0.00 23.206±0.00 15.715±3.31 19.858±9.97 21.388±3.73 27.093±7.48
ENST00000525954 12.668±0.00 N/A 0.966±0.00 10.939±4.36 35.060±0.00 13.506±0.61 5.408±3.63 5.202±0.00 3.306±0.00 4.773±0.00 23.314±5.96 6.802±1.48 15.433±7.55 N/A
ENST00000528812 N/A N/A 1.113±0.00 N/A 2.305±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529464 N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.936±0.00 N/A N/A N/A N/A
ENST00000530337 N/A N/A 4.841±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530664 N/A N/A N/A N/A N/A 8.690±0.00 N/A N/A 3.613±0.00 N/A N/A N/A N/A N/A
ENST00000531249 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 35.049±0.00 34.967±0.00 88.035±0.00
ENST00000615631 N/A N/A N/A N/A 1.660±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622850 5.942±0.00 N/A N/A N/A N/A 3.984±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Y4 CIL_0008Y4_0001 VISTA 8:11271783-11873892
CIL_000919 CIL_000919_0001 VISTA 8:11446673-12047186
CIL_0007PQ CIL_0007PQ_0001 VISTA 8:11649159-12249913

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004310 TAS:IEA farnesyl-diphosphate farnesyltransferase activity
GO:0005783 IDA endoplasmic reticulum
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006694 TAS steroid biosynthetic process
GO:0006695 TAS cholesterol biosynthetic process
GO:0008299 IEA isoprenoid biosynthetic process
GO:0008610 IEA lipid biosynthetic process
GO:0009058 IEA biosynthetic process
GO:0016021 IEA integral component of membrane
GO:0016491 IEA oxidoreductase activity
GO:0016740 IEA transferase activity
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0044255 TAS cellular lipid metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0045338 IEA farnesyl diphosphate metabolic process
GO:0051996 IEA squalene synthase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060260 FDFT1 farnesyl-diphosphate farnesyltransferase 1 protein_coding Danio_rerio
ENSMUSG00000021273 Fdft1 farnesyl diphosphate farnesyl transferase 1 protein_coding Mus_musculus

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