C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 35 (GDP-fucose transporter), member C2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000080189 SLC35C2 9606 - 20:46345980-46364458 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000243896 SLC35C2-002 46349528-46364401 protein_coding
  ENST00000317734 SLC35C2-201 46349530-46364458 protein_coding
  ENST00000372227 SLC35C2-003 46349528-46363174 protein_coding
  ENST00000372230 SLC35C2-013 46349528-46364395 protein_coding
  ENST00000420518 SLC35C2-006 46352164-46358506 protein_coding
  ENST00000424568 SLC35C2-007 46355104-46358764 protein_coding
  ENST00000480329 SLC35C2-009 46350355-46355195 processed_transcript
  ENST00000481809 SLC35C2-011 46352150-46364381 processed_transcript
  ENST00000484188 SLC35C2-008 46358427-46364361 processed_transcript
  ENST00000484318 SLC35C2-012 46352123-46364390 processed_transcript
  ENST00000487729 SLC35C2-010 46350771-46357701 processed_transcript
  ENST00000493599 SLC35C2-004 46349528-46353197 processed_transcript
  ENST00000543605 SLC35C2-001 46345980-46364404 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000243896ENST00000317734ENST00000372227ENST00000372230ENST00000424568ENST00000480329ENST00000484318ENST00000487729ENST00000493599ENST00000543605
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000243896 N/A N/A N/A 2.045±0.00 3.615±0.00 N/A N/A N/A N/A N/A N/A 5.317±0.00 3.736±0.00 N/A
ENST00000317734 8.025±0.00 6.449±0.00 N/A 2.069±0.67 N/A N/A N/A 6.027±2.49 N/A N/A 2.023±1.70 6.424±5.07 6.624±0.00 7.466±0.27
ENST00000372227 N/A 3.234±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000372230 N/A 4.972±0.00 N/A 2.011±0.06 5.051±1.63 3.359±1.33 1.634±1.23 4.639±0.00 4.653±3.16 6.923±0.00 N/A 9.992±6.12 13.568±2.82 4.141±0.36
ENST00000424568 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.732±0.00 N/A N/A N/A
ENST00000480329 N/A N/A N/A N/A N/A N/A N/A N/A 6.673±0.00 N/A 0.688±0.00 6.750±4.91 N/A N/A
ENST00000484318 8.446±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.898±0.00 1.178±0.00 N/A N/A N/A
ENST00000487729 N/A N/A N/A N/A N/A N/A 5.220±0.00 N/A N/A 8.898±0.00 3.995±0.00 N/A 15.191±0.00 12.752±0.69
ENST00000493599 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.803±0.00 N/A N/A N/A N/A
ENST00000543605 N/A N/A 0.196±0.00 N/A 0.479±0.00 0.298±0.08 N/A N/A N/A N/A 0.624±0.00 1.051±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007BF CIL_0007BF_0001 CGP 20:46173733-46364458
CIL_0006G4 CIL_0006G4_0001 CGP 20:46345980-46432985

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005793 IDA endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 IEA Golgi apparatus
GO:0005801 IDA cis-Golgi network
GO:0006810 IEA transport
GO:0010629 IEA negative regulation of gene expression
GO:0016021 IEA integral component of membrane
GO:0036065 IEA fucosylation
GO:0036066 IEA protein O-linked fucosylation
GO:0045747 IEA positive regulation of Notch signaling pathway
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000017664 Slc35c2 solute carrier family 35, member C2 protein_coding Mus_musculus

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