C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier organic anion transporter family, member 1A2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000084453 SLCO1A2 9606 - 12:21264600-21419594 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000307378 SLCO1A2-001 21264600-21395437 protein_coding
  ENST00000413682 SLCO1A2-008 21304523-21418016 protein_coding
  ENST00000416627 SLCO1A2-015 21334609-21395397 protein_coding
  ENST00000421287 SLCO1A2-013 21318831-21395397 protein_coding
  ENST00000421294 SLCO1A2-011 21314585-21334913 protein_coding
  ENST00000422327 SLCO1A2-012 21306882-21334907 protein_coding
  ENST00000430803 SLCO1A2-014 21334643-21395397 protein_coding
  ENST00000435179 SLCO1A2-007 21314620-21419584 protein_coding
  ENST00000445053 SLCO1A2-005 21314664-21334895 protein_coding
  ENST00000450590 SLCO1A2-010 21314611-21403657 protein_coding
  ENST00000453443 SLCO1A2-009 21306914-21403663 protein_coding
  ENST00000458504 SLCO1A2-002 21269414-21334900 protein_coding
  ENST00000463718 SLCO1A2-003 21274903-21324736 retained_intron
  ENST00000473830 SLCO1A2-006 21311627-21419594 processed_transcript
  ENST00000480394 SLCO1A2-004 21273942-21324681 retained_intron
  ENST00000544020 SLCO1A2-016 21269338-21334671 nonsense_mediated_decay
  ENST00000544290 SLCO1A2-017 21269459-21395261 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000307378ENST00000416627ENST00000421294ENST00000430803ENST00000435179ENST00000450590ENST00000458504ENST00000463718ENST00000480394ENST00000544290
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000307378 N/A 0.055±0.00 N/A N/A N/A 0.004±0.00 0.438±0.00 0.040±0.00 N/A N/A 0.012±0.00 0.026±0.01 0.034±0.02
ENST00000416627 0.293±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.313±0.00
ENST00000421294 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.073±0.00 N/A
ENST00000430803 N/A N/A N/A N/A 0.142±0.00 0.200±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000435179 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.319±0.00 N/A N/A
ENST00000450590 N/A N/A N/A N/A 0.115±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000458504 N/A N/A N/A N/A N/A N/A 0.116±0.00 0.123±0.00 0.307±0.00 N/A 0.004±0.00 N/A N/A
ENST00000463718 0.024±0.00 0.085±0.00 N/A 0.210±0.00 0.034±0.00 0.010±0.00 N/A 0.062±0.00 0.099±0.00 0.017±0.00 0.012±0.00 N/A 0.117±0.00
ENST00000480394 N/A N/A 2.901±0.00 N/A N/A N/A 2.582±0.00 0.050±0.00 N/A N/A N/A 0.023±0.00 N/A
ENST00000544290 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.119±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005PW CIL_0005PW_0001 CGP 12:21131202-21419594
CIL_0005PZ CIL_0005PZ_0001 CGP 12:21264600-21419594

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005515 IEA protein binding
GO:0005886 TAS plasma membrane
GO:0006810 IEA transport
GO:0008206 TAS bile acid metabolic process
GO:0008514 TAS organic anion transmembrane transporter activity
GO:0015711 TAS organic anion transport
GO:0015721 TAS bile acid and bile salt transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0043252 TAS sodium-independent organic anion transport
GO:0044281 TAS small molecule metabolic process
GO:0055085 TAS:IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000030237 Slco1a4 solute carrier organic anion transporter family, member 1a4 protein_coding Mus_musculus
ENSMUSG00000041698 Slco1a1 solute carrier organic anion transporter family, member 1a1 protein_coding Mus_musculus
ENSMUSG00000063975 Slco1a5 solute carrier organic anion transporter family, member 1a5 protein_coding Mus_musculus
ENSMUSG00000079262 Slco1a6 solute carrier organic anion transporter family, member 1a6 protein_coding Mus_musculus
ENSMUSG00000079263 Gm6614 predicted gene 6614 protein_coding Mus_musculus
ENSMUSG00000084927 Gm5724 predicted gene 5724 protein_coding Mus_musculus

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