C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000085721 RRN3 9606 - 16:15060022-15094317 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000198767 RRN3-001 15060022-15094317 protein_coding
  ENST00000327307 RRN3-003 15061629-15094008 protein_coding
  ENST00000429751 RRN3-004 15061428-15094249 protein_coding
  ENST00000561685 RRN3-006 15074677-15083750 retained_intron
  ENST00000563559 RRN3-002 15060035-15094311 protein_coding
  ENST00000564131 RRN3-005 15076435-15094253 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000198767ENST00000327307
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000198767 6.745±0.00 1.599±0.00 1.452±0.00 3.629±1.20 5.160±1.63 1.855±0.34 2.132±0.24 6.862±1.61 4.571±1.09 2.870±0.86 5.864±0.00 1.867±0.53 2.760±0.58 4.376±0.55
ENST00000327307 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.492±0.00 N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001701 IEA in utero embryonic development
GO:0005488 IEA binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005730 IDA nucleolus
GO:0006352 IEA DNA-templated transcription, initiation
GO:0006360 TAS transcription from RNA polymerase I promoter
GO:0006361 TAS transcription initiation from RNA polymerase I promoter
GO:0007000 IEA nucleolus organization
GO:0007028 IEA cytoplasm organization
GO:0008283 IEA cell proliferation
GO:0010467 TAS gene expression
GO:0042254 IEA ribosome biogenesis
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0048872 IEA homeostasis of number of cells
GO:0070063 IEA RNA polymerase binding
GO:1902254 IEA negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator
GO:2000142 IEA regulation of DNA-templated transcription, initiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000073797 rrn3 RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000022682 Rrn3 RRN3 RNA polymerase I transcription factor homolog (yeast) protein_coding Mus_musculus

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