C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sorting nexin 10
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000086300 SNX10 9606 + 7:26291895-26374329 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000338523 SNX10-002 26291923-26374325 protein_coding
  ENST00000396376 SNX10-001 26293054-26374329 protein_coding
  ENST00000409367 SNX10-007 26354057-26372608 protein_coding
  ENST00000409838 SNX10-004 26364325-26372944 protein_coding
  ENST00000412416 SNX10-006 26292011-26361031 protein_coding
  ENST00000416246 SNX10-005 26291921-26372022 protein_coding
  ENST00000446848 SNX10-201 26291895-26374317 protein_coding
  ENST00000462993 SNX10-003 26370388-26372746 processed_transcript
  ENST00000619420 SNX10-202 26360454-26374327 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000338523ENST00000396376ENST00000409367ENST00000409838ENST00000416246ENST00000446848ENST00000619420
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000338523 3.347±0.00 2.101±0.00 N/A 9.684±1.54 3.946±2.51 0.617±0.00 0.280±0.00 5.024±3.99 5.653±0.00 1.574±0.00 N/A 0.633±0.38 2.493±1.25 0.835±0.00
ENST00000396376 N/A N/A 1.040±0.00 2.266±0.00 N/A N/A N/A 1.988±0.00 1.119±0.00 N/A N/A 0.112±0.00 N/A N/A
ENST00000409367 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.608±0.00 2.603±0.00 4.473±0.00 1.919±0.00
ENST00000409838 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.176±0.00 N/A N/A N/A
ENST00000416246 N/A N/A N/A N/A N/A N/A 0.454±0.00 N/A N/A N/A N/A 3.680±0.00 3.399±0.00 1.628±0.00
ENST00000446848 N/A N/A N/A N/A 8.249±0.00 N/A 0.240±0.00 11.334±0.00 N/A 3.235±0.00 N/A N/A 0.780±0.00 N/A
ENST00000619420 1.374±0.00 2.531±0.00 N/A 9.752±3.98 4.123±0.00 0.500±0.00 0.220±0.07 8.148±0.00 0.249±0.00 N/A 0.164±0.00 0.634±0.38 0.814±0.00 2.992±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q3 CIL_0008Q3_0001 VISTA 7:25714231-26318034
CIL_000874 CIL_000874_0001 VISTA 7:25760923-26361842
CIL_0009DE CIL_0009DE_0001 VISTA 7:26185042-26786016
CIL_0007OD CIL_0007OD_0001 UCNEbase 7:26191819-26506343
CIL_0002CN CIL_0002CN_0001 CGP 7:26201162-26374329

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005545 IMP 1-phosphatidylinositol binding
GO:0005634 IDA nucleus
GO:0005783 IDA endoplasmic reticulum
GO:0005813 IDA centrosome
GO:0006886 IBA intracellular protein transport
GO:0007032 IMP endosome organization
GO:0030316 ISS osteoclast differentiation
GO:0031313 IDA extrinsic component of endosome membrane
GO:0035091 IEA phosphatidylinositol binding
GO:0042384 IMP cilium assembly
GO:0051117 IPI ATPase binding
GO:0061512 IMP protein localization to cilium
GO:0071539 IMP protein localization to centrosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004405 snx10a sorting nexin 10a protein_coding Danio_rerio
ENSDARG00000040474 snx10b sorting nexin 10b protein_coding Danio_rerio
ENSMUSG00000038301 Snx10 sorting nexin 10 protein_coding Mus_musculus

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