C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: mitochondrial ribosomal protein L28
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000086504 MRPL28 9606 - 16:367384-370527 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000199706 MRPL28-006 367384-370527 protein_coding
  ENST00000389675 MRPL28-008 367613-370509 protein_coding
  ENST00000429738 MRPL28-012 367396-369803 protein_coding
  ENST00000441883 MRPL28-010 367724-370432 protein_coding
  ENST00000447696 MRPL28-009 368335-370502 protein_coding
  ENST00000450882 MRPL28-011 368408-370338 protein_coding
  ENST00000461550 MRPL28-007 367398-370225 retained_intron
  ENST00000469744 MRPL28-003 367427-370234 retained_intron
  ENST00000481453 MRPL28-002 367394-370526 retained_intron
  ENST00000483764 MRPL28-004 367384-370509 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000199706ENST00000389675ENST00000441883ENST00000447696ENST00000450882ENST00000461550
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000199706 29.420±0.00 40.848±0.00 N/A 20.153±15.07 17.547±17.18 4.073±3.54 12.685±11.51 10.569±8.63 15.828±14.27 25.412±0.00 8.712±0.00 21.658±8.76 35.584±18.01 35.414±17.38
ENST00000389675 N/A N/A 1.618±0.00 7.361±0.00 1.909±0.00 0.306±0.00 0.398±0.00 1.382±0.00 0.837±0.00 1.012±0.00 5.252±0.10 5.052±3.70 8.963±0.00 15.469±0.00
ENST00000441883 N/A N/A N/A N/A 0.716±0.00 1.583±0.00 N/A N/A N/A N/A N/A 9.286±0.00 N/A N/A
ENST00000447696 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.698±0.00 N/A N/A 18.900±0.00
ENST00000450882 N/A N/A N/A 14.562±0.00 N/A N/A N/A N/A N/A 2.124±0.00 N/A 6.873±6.08 N/A N/A
ENST00000461550 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.834±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00094P CIL_00094P_0001 VISTA 16:-195470-405616
CIL_0008HK CIL_0008HK_0001 VISTA 16:-187027-414801

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003735 IEA:NAS structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005761 NAS mitochondrial ribosome
GO:0006412 NAS translation
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057805 mrpl28 mitochondrial ribosomal protein L28 protein_coding Danio_rerio
ENSMUSG00000024181 Mrpl28 mitochondrial ribosomal protein L28 protein_coding Mus_musculus

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