C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nidogen 2 (osteonidogen)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000087303 NID2 9606 - 14:52004803-52069228 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000216286 NID2-001 52004803-52068994 protein_coding
  ENST00000541773 NID2-201 52004810-52068994 protein_coding
  ENST00000553297 NID2-006 52007810-52012021 retained_intron
  ENST00000554284 NID2-003 52028623-52042111 retained_intron
  ENST00000555310 NID2-007 52005304-52008106 retained_intron
  ENST00000556572 NID2-004 52005455-52038952 protein_coding
  ENST00000556686 NID2-008 52005216-52007924 retained_intron
  ENST00000557051 NID2-005 52014332-52020262 retained_intron
  ENST00000617139 NID2-202 52004803-52069228 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000216286ENST00000541773ENST00000617139
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000216286 N/A N/A N/A N/A N/A N/A 1.802±0.00 N/A N/A N/A 16.212±0.00 22.360±5.82
ENST00000541773 12.344±0.00 4.654±0.00 0.958±0.00 6.314±3.48 4.349±1.74 6.047±3.47 N/A 2.445±0.00 2.633±1.31 1.471±0.00 6.884±1.22 19.937±0.00
ENST00000617139 6.754±0.00 N/A N/A 6.874±0.00 N/A N/A N/A N/A N/A N/A 11.470±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007J1 CIL_0007J1_0002 CGP 14:51989475-52069228

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IPI:IEA protein binding
GO:0005518 TAS collagen binding
GO:0005576 TAS extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005604 IDA basement membrane
GO:0007155 TAS cell adhesion
GO:0007160 IEA cell-matrix adhesion
GO:0009986 IEA cell surface
GO:0030198 TAS extracellular matrix organization
GO:0031012 IDA extracellular matrix
GO:0070062 IDA extracellular vesicular exosome
GO:0071711 TAS basement membrane organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009471 nid2b nidogen 2b (osteonidogen) protein_coding Danio_rerio
ENSDARG00000075707 nid2a nidogen 2a (osteonidogen) protein_coding Danio_rerio
ENSMUSG00000021806 Nid2 nidogen 2 protein_coding Mus_musculus

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