C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CCR4-NOT transcription complex, subunit 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000088038 CNOT3 9606 + 19:54137728-54155681 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000221232 CNOT3-001 54137728-54155681 protein_coding
  ENST00000358389 CNOT3-003 54141396-54155680 protein_coding
  ENST00000440571 CNOT3-009 54143730-54148697 protein_coding
  ENST00000447684 CNOT3-201 54144005-54155680 protein_coding
  ENST00000457463 CNOT3-006 54149560-54154455 protein_coding
  ENST00000471126 CNOT3-011 54153724-54155681 protein_coding
  ENST00000496327 CNOT3-010 54149730-54153819 processed_transcript
  ENST00000613073 CNOT3-005 54143737-54155681 nonsense_mediated_decay
  ENST00000617930 CNOT3-007 54153003-54155681 retained_intron
  ENST00000618939 CNOT3-002 54137787-54155680 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000221232ENST00000358389ENST00000440571ENST00000617930ENST00000618939
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000221232 9.542±0.00 11.352±0.00 1.375±0.00 3.396±2.29 4.462±3.37 4.311±3.13 4.552±0.00 6.313±5.42 2.884±0.99 4.148±3.58 9.147±0.00 16.209±9.16 13.984±2.57 34.730±19.74
ENST00000358389 N/A N/A 0.839±0.00 0.643±0.00 0.709±0.00 0.382±0.00 N/A N/A N/A 0.577±0.00 N/A N/A N/A N/A
ENST00000440571 5.660±0.00 N/A N/A 4.785±0.00 N/A N/A N/A N/A N/A 10.237±0.00 2.459±0.00 N/A N/A N/A
ENST00000617930 N/A N/A N/A N/A 1.082±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618939 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.268±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005OD CIL_0005OD_0001 CGP 19:54115410-54155681
CIL_0001U4 CIL_0001U4_0001 CGP 19:54137728-54159882

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 TAS nuclear-transcribed mRNA poly(A) tail shortening
GO:0000932 ISS cytoplasmic mRNA processing body
GO:0001829 IEA trophectodermal cell differentiation
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006417 IEA regulation of translation
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0030014 IDA CCR4-NOT complex
GO:0031047 IEA gene silencing by RNA
GO:2000036 IMP regulation of stem cell maintenance

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007135 cnot3a CCR4-NOT transcription complex, subunit 3a protein_coding Danio_rerio
ENSDARG00000019842 cnot3b CCR4-NOT transcription complex, subunit 3b protein_coding Danio_rerio
ENSMUSG00000035632 Cnot3 CCR4-NOT transcription complex, subunit 3 protein_coding Mus_musculus

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