C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: early B-cell factor 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000088881 EBF4 9606 + 20:2692878-2760108 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000342725 EBF4-009 2692879-2760101 protein_coding
  ENST00000380648 EBF4-201 2692878-2760107 protein_coding
  ENST00000449079 EBF4-002 2692878-2760101 nonsense_mediated_decay
  ENST00000463145 EBF4-006 2706241-2760077 protein_coding
  ENST00000469215 EBF4-005 2693689-2749420 processed_transcript
  ENST00000477287 EBF4-003 2755088-2760101 processed_transcript
  ENST00000481662 EBF4-008 2752496-2760108 processed_transcript
  ENST00000491472 EBF4-007 2751691-2755662 processed_transcript
  ENST00000497450 EBF4-004 2692879-2706237 processed_transcript
  ENST00000609451 EBF4-011 2693574-2759393 protein_coding
  ENST00000609967 EBF4-010 2693574-2760071 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000342725ENST00000380648ENST00000449079ENST00000463145ENST00000469215ENST00000477287ENST00000481662ENST00000497450ENST00000609451ENST00000609967
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000342725 3.547±0.00 N/A N/A 0.106±0.00 1.110±0.82 4.242±0.00 N/A N/A 0.321±0.00 3.974±0.00 N/A 20.613±12.03 2.940±0.50 1.699±1.09
ENST00000380648 N/A N/A N/A N/A N/A 1.425±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449079 0.967±0.00 3.424±0.00 N/A 4.591±0.00 0.898±0.00 3.502±0.00 0.437±0.00 3.316±0.00 N/A 2.428±0.00 0.476±0.00 N/A 0.657±0.00 1.510±0.00
ENST00000463145 N/A N/A N/A N/A N/A N/A 0.706±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000469215 N/A N/A 0.474±0.00 0.504±0.00 N/A N/A N/A N/A N/A 1.320±0.00 N/A 0.368±0.00 N/A N/A
ENST00000477287 N/A 1.037±0.00 N/A N/A N/A 2.261±0.00 0.281±0.00 0.882±0.75 0.980±0.00 2.531±0.00 N/A 5.847±1.27 1.078±0.10 0.991±0.19
ENST00000481662 N/A N/A N/A 1.377±0.00 N/A N/A N/A 2.975±0.00 N/A N/A N/A N/A N/A N/A
ENST00000497450 N/A N/A N/A 1.133±0.00 N/A N/A N/A N/A 1.350±0.00 N/A N/A N/A 4.203±0.00 N/A
ENST00000609451 1.924±0.00 N/A 0.525±0.00 0.184±0.00 N/A N/A 0.431±0.00 2.008±0.00 N/A N/A 0.147±0.00 3.727±4.87 0.934±0.00 1.445±0.00
ENST00000609967 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.746±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SG CIL_0007SG_0001 VISTA 20:2438562-3039143
CIL_0000FY CIL_0000FY_0001 CGP 20:2658395-2760108
CIL_0000FX CIL_0000FX_0001 CGP 20:2692878-2800637

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000977 IEA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001228 IEA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0008134 IEA transcription factor binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000053552 Ebf4 early B cell factor 4 protein_coding Mus_musculus

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