C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding motif protein 41
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000089682 RBM41 9606 - X:107064420-107118823 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000372479 RBM41-002 107067138-107118804 protein_coding
  ENST00000372487 RBM41-001 107064420-107118800 protein_coding
  ENST00000434854 RBM41-008 107069310-107116766 protein_coding
  ENST00000471079 RBM41-004 107114300-107116766 processed_transcript
  ENST00000474499 RBM41-007 107066645-107069277 processed_transcript
  ENST00000475556 RBM41-006 107088436-107115454 processed_transcript
  ENST00000485676 RBM41-005 107088526-107116768 processed_transcript
  ENST00000495517 RBM41-003 107066300-107118823 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000372479ENST00000372487ENST00000471079ENST00000495517
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000372479 N/A 0.458±0.00 0.453±0.00 0.870±0.35 N/A N/A 1.177±0.00 1.070±0.29 0.626±0.00 0.384±0.00 0.291±0.15 N/A
ENST00000372487 0.351±0.00 N/A 0.519±0.00 0.618±0.00 1.381±0.00 0.662±0.00 N/A 0.359±0.00 0.684±0.00 0.418±0.12 0.393±0.00 0.615±0.00
ENST00000471079 N/A N/A N/A N/A N/A 0.573±0.00 N/A N/A N/A N/A N/A N/A
ENST00000495517 N/A N/A N/A N/A 0.490±0.00 N/A N/A N/A N/A 1.328±1.16 0.094±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000173 CIL_000173_0002 CGP X:106900164-107118823
CIL_0006AD CIL_0006AD_0001 CGP X:107064420-107206433

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000054096 rbm41 RNA binding motif protein 41 protein_coding Danio_rerio
ENSMUSG00000031433 Rbm41 RNA binding motif protein 41 protein_coding Mus_musculus

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