C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: spastic paraplegia 21 (autosomal recessive, Mast syndrome)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000090487 SPG21 9606 - 15:64963021-64990310 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000204566 SPG21-001 64963021-64989936 protein_coding
  ENST00000416889 SPG21-003 64963204-64989911 protein_coding
  ENST00000433215 SPG21-005 64963027-64989474 protein_coding
  ENST00000557795 SPG21-011 64974630-64989506 protein_coding
  ENST00000558339 SPG21-008 64982933-64989911 processed_transcript
  ENST00000558415 SPG21-009 64980930-64989496 protein_coding
  ENST00000558765 SPG21-010 64974602-64989707 protein_coding
  ENST00000558943 SPG21-012 64980874-64987476 protein_coding
  ENST00000559199 SPG21-002 64963027-64981627 protein_coding
  ENST00000559677 SPG21-006 64976473-64990310 protein_coding
  ENST00000560564 SPG21-007 64974666-64989946 processed_transcript
  ENST00000560878 SPG21-013 64980969-64988925 protein_coding
  ENST00000561078 SPG21-004 64963056-64989815 nonsense_mediated_decay
  ENST00000561088 SPG21-015 64988732-64989526 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000204566ENST00000416889ENST00000433215ENST00000559199ENST00000561078
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000204566 35.402±0.00 36.770±0.00 0.582±0.00 12.527±0.00 15.718±14.75 13.262±11.65 7.211±6.51 17.182±13.81 10.882±4.53 10.998±9.45 6.424±5.04 26.845±0.51 39.195±4.41 26.976±0.00
ENST00000416889 7.352±0.00 N/A N/A N/A 7.522±0.00 7.842±0.00 3.138±2.21 7.163±0.00 6.934±0.00 11.368±0.00 13.962±0.00 13.237±0.00 24.647±0.00 13.368±0.00
ENST00000433215 N/A N/A N/A 3.723±0.22 1.621±0.00 4.081±0.00 1.087±0.00 4.531±0.45 N/A 3.171±0.00 5.236±0.00 14.119±6.43 14.980±2.29 9.426±0.00
ENST00000559199 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.727±0.00 N/A N/A N/A N/A
ENST00000561078 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.868±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RY CIL_0007RY_0001 VISTA 15:64785331-65389080
CIL_0004WJ CIL_0004WJ_0002 CGP 15:64911902-64990310

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005768 IEA endosome
GO:0005829 IDA cytosol
GO:0008219 IEA cell death
GO:0016020 IEA membrane
GO:0030140 IDA trans-Golgi network transport vesicle
GO:0042609 IPI CD4 receptor binding
GO:0050851 IC antigen receptor-mediated signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007760 spg21 spastic paraplegia 21 (H. sapiens) protein_coding Danio_rerio
ENSDARG00000088786 SPG21 (2 of 2) spastic paraplegia 21 (autosomal recessive, Mast syndrome) protein_coding Danio_rerio
ENSMUSG00000032388 Spg21 spastic paraplegia 21 homolog (human) protein_coding Mus_musculus

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