C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pseudouridylate synthase 7 (putative)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000091127 PUS7 9606 - 7:105439661-105522267 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000356362 PUS7-002 105456511-105522258 protein_coding
  ENST00000469408 PUS7-001 105457659-105522258 protein_coding
  ENST00000478208 PUS7-005 105470286-105472188 retained_intron
  ENST00000481939 PUS7-003 105439661-105522267 nonsense_mediated_decay
  ENST00000482157 PUS7-006 105491586-105508135 protein_coding
  ENST00000487277 PUS7-004 105491549-105495347 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000356362ENST00000469408ENST00000481939
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000356362 2.662±0.00 3.279±0.00 0.433±0.00 0.554±0.02 0.976±0.35 0.732±0.52 0.342±0.00 1.468±0.00 1.663±0.00 N/A 2.021±0.00 5.171±2.89 1.593±0.54 2.214±0.07
ENST00000469408 1.576±0.00 0.968±0.00 0.198±0.00 0.468±0.30 0.972±0.32 1.254±0.56 0.374±0.07 0.706±0.00 0.760±0.00 1.042±0.35 1.241±0.00 2.703±1.16 N/A 1.076±0.00
ENST00000481939 N/A N/A N/A N/A N/A N/A 0.269±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005BH CIL_0005BH_0002 CGP 7:105110704-105522267
CIL_00040X CIL_00040X_0001 CGP 7:105439661-105567677

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001522 IEA pseudouridine synthesis
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0008033 IEA tRNA processing
GO:0009451 IEA RNA modification
GO:0009982 IEA pseudouridine synthase activity
GO:0019899 IPI enzyme binding
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000031774 pus7 pseudouridylate synthase 7 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000057541 Pus7 pseudouridylate synthase 7 homolog (S. cerevisiae) protein_coding Mus_musculus

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