C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: gamma-aminobutyric acid (GABA) A receptor, pi
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000094755 GABRP 9606 + 5:170763350-170814047 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000265294 GABRP-201 170783719-170814047 protein_coding
  ENST00000518122 GABRP-007 170782693-170789232 protein_coding
  ENST00000518525 GABRP-001 170782682-170814047 protein_coding
  ENST00000519137 GABRP-011 170789143-170794388 retained_intron
  ENST00000519196 GABRP-009 170764914-170794236 protein_coding
  ENST00000519385 GABRP-003 170783725-170812498 protein_coding
  ENST00000519598 GABRP-002 170783747-170810076 protein_coding
  ENST00000521009 GABRP-008 170764294-170795244 protein_coding
  ENST00000521481 GABRP-010 170763350-170797521 protein_coding
  ENST00000522868 GABRP-006 170772565-170805742 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000265294ENST00000518525ENST00000519196ENST00000519385ENST00000519598ENST00000521009ENST00000521481ENST00000522868
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000265294 0.165±0.00 0.262±0.00 N/A N/A 8.433±7.67 0.023±0.00 N/A N/A 0.065±0.05 0.035±0.00 N/A 0.319±0.17 0.217±0.00 N/A
ENST00000518525 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.205±0.00 N/A N/A
ENST00000519196 1.057±0.00 2.670±0.00 0.233±0.00 5.103±0.00 N/A 0.185±0.00 1.237±0.00 2.574±0.00 1.299±0.00 N/A 0.408±0.23 1.172±0.00 N/A 0.906±0.00
ENST00000519385 N/A N/A 0.510±0.00 N/A 0.402±0.00 N/A N/A N/A 0.199±0.00 N/A N/A 0.988±0.00 0.467±0.00 N/A
ENST00000519598 N/A N/A N/A N/A 0.741±0.00 N/A N/A 0.323±0.00 N/A N/A N/A 0.302±0.00 N/A N/A
ENST00000521009 0.743±0.00 2.121±0.00 N/A 4.757±0.00 N/A 1.378±0.00 1.367±0.00 5.301±0.00 2.404±0.00 1.925±0.00 0.328±0.00 2.605±0.81 0.286±0.00 2.424±0.00
ENST00000521481 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.150±0.00 N/A N/A N/A
ENST00000522868 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.565±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SG CIL_0008SG_0001 VISTA 5:170690333-171291455
CIL_00098H CIL_00098H_0001 VISTA 5:170731788-171333093
CIL_000977 CIL_000977_0001 VISTA 5:170744249-171345366

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004890 IEA GABA-A receptor activity
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0005254 IEA chloride channel activity
GO:0005886 IEA plasma membrane
GO:0006810 IEA transport
GO:0006811 IEA ion transport
GO:0007165 IEA signal transduction
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0034220 IEA ion transmembrane transport
GO:0034707 IEA chloride channel complex
GO:0045202 IEA synapse
GO:0045211 IEA postsynaptic membrane
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020901 gabrp gamma-aminobutyric acid (GABA) A receptor, pi protein_coding Danio_rerio
ENSMUSG00000020159 Gabrp gamma-aminobutyric acid (GABA) A receptor, pi protein_coding Mus_musculus

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