C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cytochrome P450, family 26, subfamily A, polypeptide 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000095596 CYP26A1 9606 + 10:93073475-93077890 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000224356 CYP26A1-002 93073890-93077890 protein_coding
  ENST00000371531 CYP26A1-001 93073475-93077884 protein_coding
  ENST00000622925 CYP26A1-006 93074078-93075275 retained_intron
  ENST00000623162 CYP26A1-004 93075629-93077319 retained_intron
  ENST00000624589 CYP26A1-003 93074312-93077479 nonsense_mediated_decay
  ENST00000625202 CYP26A1-005 93076333-93077082 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartLiverLungOvaryPlacentaTestisENST00000224356ENST00000622925ENST00000623162ENST00000624589ENST00000625202
Transcript ID Adipose Adrenal Brain Breast Heart Liver Lung Ovary Placenta Testis
ENST00000224356 N/A N/A N/A 0.029±0.00 N/A 0.261±0.00 N/A N/A 3.226±0.00 0.055±0.00
ENST00000622925 0.112±0.00 0.099±0.00 N/A N/A N/A N/A 0.301±0.00 0.067±0.00 N/A 0.111±0.01
ENST00000623162 N/A N/A 0.463±0.00 0.086±0.00 0.164±0.00 N/A N/A 0.037±0.00 N/A N/A
ENST00000624589 0.032±0.00 0.014±0.00 0.319±0.01 N/A N/A 1.425±0.00 0.036±0.00 N/A 2.677±1.51 0.057±0.01
ENST00000625202 N/A N/A N/A N/A N/A N/A N/A N/A 1.485±0.00 0.032±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000ZX CIL_0000ZX_0001 CGP 10:93060808-93077890
CIL_0000ZY CIL_0000ZY_0001 CGP 10:93073475-93482317

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001972 IDA retinoic acid binding
GO:0005506 IEA iron ion binding
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006766 TAS vitamin metabolic process
GO:0006805 TAS xenobiotic metabolic process
GO:0007417 IEA central nervous system development
GO:0008152 TAS metabolic process
GO:0008401 IDA retinoic acid 4-hydroxylase activity
GO:0009952 IEA anterior/posterior pattern specification
GO:0014032 IEA neural crest cell development
GO:0016705 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0019825 TAS oxygen binding
GO:0020037 NAS:IEA heme binding
GO:0034653 IDA retinoic acid catabolic process
GO:0042573 IEA retinoic acid metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0048384 IEA retinoic acid receptor signaling pathway
GO:0048387 TAS negative regulation of retinoic acid receptor signaling pathway
GO:0055114 IEA oxidation-reduction process
GO:0071300 IEA cellular response to retinoic acid

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000033999 cyp26a1 cytochrome P450, subfamily XXVIA, polypeptide 1 protein_coding Danio_rerio
ENSMUSG00000024987 Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 protein_coding Mus_musculus

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