C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synapse defective 1, Rho GTPase, homolog 2 (C. elegans)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000097096 SYDE2 9606 - 1:85156873-85201046 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000234668 SYDE2-001 85181159-85200513 retained_intron
  ENST00000341460 SYDE2-002 85156873-85201046 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000234668ENST00000341460
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000234668 0.224±0.00 0.140±0.00 1.015±0.00 0.278±0.07 0.377±0.08 1.150±0.00 0.594±0.00 0.463±0.00 0.533±0.32 1.301±0.00 0.103±0.04 0.514±0.00 0.155±0.08 N/A
ENST00000341460 0.452±0.00 0.228±0.00 0.748±0.00 0.218±0.00 1.201±0.62 1.854±0.12 1.117±0.00 1.091±0.64 0.431±0.12 1.198±0.69 0.080±0.07 0.770±0.43 0.462±0.22 1.429±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QR CIL_0007QR_0001 VISTA 1:84924957-85525799

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005100 ISS Rho GTPase activator activity
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005829 TAS cytosol
GO:0007165 IEA signal transduction
GO:0007264 TAS small GTPase mediated signal transduction
GO:0032862 ISS activation of Rho GTPase activity
GO:0051056 TAS regulation of small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078537 SYDE2 synapse defective 1, Rho GTPase, homolog 2 (C. elegans) protein_coding Danio_rerio
ENSMUSG00000036863 Syde2 synapse defective 1, Rho GTPase, homolog 2 (C. elegans) protein_coding Mus_musculus

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