C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: actin binding LIM protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000099204 ABLIM1 9606 - 10:114431113-114685003 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000277895 ABLIM1-001 114436038-114658298 protein_coding
  ENST00000369252 ABLIM1-201 114431113-114684655 protein_coding
  ENST00000369253 ABLIM1-010 114435441-114526835 protein_coding
  ENST00000369256 ABLIM1-005 114435954-114685003 protein_coding
  ENST00000369266 ABLIM1-202 114435461-114526830 protein_coding
  ENST00000392952 ABLIM1-009 114431113-114526931 protein_coding
  ENST00000392955 ABLIM1-002 114431113-114684457 nonsense_mediated_decay
  ENST00000428430 ABLIM1-011 114451645-114526918 protein_coding
  ENST00000440467 ABLIM1-012 114450079-114487993 protein_coding
  ENST00000466400 ABLIM1-014 114465465-114468265 retained_intron
  ENST00000477638 ABLIM1-007 114595002-114610717 processed_transcript
  ENST00000481974 ABLIM1-006 114547491-114575537 retained_intron
  ENST00000485570 ABLIM1-013 114439617-114441041 retained_intron
  ENST00000533213 ABLIM1-203 114431113-114684655 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000277895ENST00000369253ENST00000369256ENST00000392952ENST00000392955
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000277895 N/A N/A 6.632±0.00 5.446±0.00 N/A N/A N/A N/A 5.045±0.00 N/A N/A N/A N/A N/A
ENST00000369253 N/A N/A 6.669±0.00 N/A N/A 8.970±0.00 N/A N/A 7.004±0.00 5.997±0.00 2.388±0.00 21.133±0.00 N/A N/A
ENST00000369256 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.055±0.00 N/A N/A N/A
ENST00000392952 36.703±0.00 N/A 1.661±0.00 N/A 7.567±3.75 N/A 41.158±0.00 N/A 4.477±0.00 N/A 5.001±0.00 20.793±10.48 N/A N/A
ENST00000392955 42.889±0.00 3.010±0.00 N/A 7.180±5.49 11.824±0.00 19.349±0.00 N/A 4.331±0.00 1.268±0.00 3.477±0.66 5.219±0.00 3.179±0.00 3.972±1.34 7.833±1.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002OJ CIL_0002OJ_0001 CGP 10:114294824-114685003
CIL_0001R6 CIL_0001R6_0002 CGP 10:114431113-114899832

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001725 IDA stress fiber
GO:0003779 IEA actin binding
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0007010 IEA cytoskeleton organization
GO:0007411 TAS axon guidance
GO:0007601 TAS visual perception
GO:0008270 IEA zinc ion binding
GO:0009887 TAS organ morphogenesis
GO:0015629 TAS actin cytoskeleton
GO:0030027 IDA lamellipodium
GO:0030032 IMP lamellipodium assembly
GO:0042384 IMP cilium assembly
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045064 ablim1b actin binding LIM protein 1b protein_coding Danio_rerio
ENSDARG00000060149 ablim1a actin binding LIM protein 1a protein_coding Danio_rerio
ENSMUSG00000025085 Ablim1 actin-binding LIM protein 1 protein_coding Mus_musculus

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