C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polymerase (RNA) mitochondrial (DNA directed)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000099821 POLRMT 9606 - 19:617223-633604 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000587057 POLRMT-005 617228-618760 retained_intron
  ENST00000588649 POLRMT-001 617223-633604 protein_coding
  ENST00000589961 POLRMT-003 617646-619226 retained_intron
  ENST00000590336 POLRMT-004 617431-619016 protein_coding
  ENST00000590573 POLRMT-002 623454-630168 protein_coding
  ENST00000590709 POLRMT-009 622535-625509 retained_intron
  ENST00000592633 POLRMT-007 617224-617993 retained_intron
  ENST00000592863 POLRMT-006 629636-633525 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000587057ENST00000588649ENST00000589961ENST00000590336ENST00000590573ENST00000590709ENST00000592633
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000587057 N/A 7.138±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588649 8.251±0.00 9.812±0.00 0.473±0.00 5.619±4.30 5.791±5.47 4.965±3.92 7.962±0.00 5.813±3.44 3.044±2.22 2.855±0.00 19.722±17.99 9.956±6.77 6.330±1.81 34.843±2.37
ENST00000589961 N/A N/A N/A N/A N/A N/A N/A N/A 5.130±0.00 N/A 3.001±0.00 12.304±0.00 N/A N/A
ENST00000590336 N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.527±0.00 N/A N/A 9.124±0.00 N/A
ENST00000590573 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.756±0.00 N/A 2.805±0.00 N/A N/A
ENST00000590709 N/A N/A N/A N/A N/A N/A 0.678±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000592633 N/A N/A N/A N/A N/A N/A N/A 12.643±0.00 4.384±2.18 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0001 VISTA 19:477571-1083531
CIL_0005ZK CIL_0005ZK_0002 CGP 19:589893-633604
CIL_0005ZL CIL_0005ZL_0002 CGP 19:617223-643703

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003899 TAS:IEA DNA-directed RNA polymerase activity
GO:0005515 IPI protein binding
GO:0005739 IDA mitochondrion
GO:0005759 TAS mitochondrial matrix
GO:0006351 IEA transcription, DNA-templated
GO:0006390 TAS transcription from mitochondrial promoter
GO:0006391 TAS transcription initiation from mitochondrial promoter
GO:0010467 TAS gene expression
GO:0042645 IDA mitochondrial nucleoid
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061658 POLRMT polymerase (RNA) mitochondrial (DNA directed) protein_coding Danio_rerio
ENSMUSG00000020329 Polrmt polymerase (RNA) mitochondrial (DNA directed) protein_coding Mus_musculus

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