C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small G protein signaling modulator 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100359 SGSM3 9606 + 22:40370591-40410289 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000248929 SGSM3-001 40370611-40410289 protein_coding
  ENST00000417424 SGSM3-012 40408794-40410118 protein_coding
  ENST00000427834 SGSM3-013 40408313-40409811 protein_coding
  ENST00000457767 SGSM3-004 40370591-40406223 protein_coding
  ENST00000462457 SGSM3-011 40408627-40409785 retained_intron
  ENST00000467915 SGSM3-008 40407339-40408687 retained_intron
  ENST00000469719 SGSM3-010 40408388-40410047 retained_intron
  ENST00000470518 SGSM3-009 40407277-40409116 retained_intron
  ENST00000478085 SGSM3-003 40404113-40410103 retained_intron
  ENST00000480830 SGSM3-005 40406113-40408409 retained_intron
  ENST00000481028 SGSM3-007 40407251-40407701 retained_intron
  ENST00000481408 SGSM3-006 40406438-40408429 retained_intron
  ENST00000485962 SGSM3-002 40370639-40410108 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLungOvaryPlacentaTestisENST00000248929ENST00000457767
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Lung Ovary Placenta Testis
ENST00000248929 11.037±0.00 1.947±0.00 6.658±0.00 8.532±3.70 7.597±2.51 4.885±1.98 10.964±8.07 7.570±3.53 26.473±0.00 17.482±2.86 29.591±0.00
ENST00000457767 N/A 5.797±0.00 N/A N/A N/A N/A 7.712±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005W1 CIL_0005W1_0001 CGP 22:40370591-40636702

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005097 IEA:IDA Rab GTPase activator activity
GO:0005515 IPI:IEA protein binding
GO:0005829 IDA cytosol
GO:0007050 IEA cell cycle arrest
GO:0017137 IDA Rab GTPase binding
GO:0032313 IEA regulation of Rab GTPase activity
GO:0032483 IEP regulation of Rab protein signal transduction
GO:0032486 IEP Rap protein signal transduction
GO:0032851 IEA positive regulation of Rab GTPase activity
GO:0033126 IDA positive regulation of GTP catabolic process
GO:0048227 IMP plasma membrane to endosome transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019038 sgsm3 small G protein signaling modulator 3 protein_coding Danio_rerio
ENSMUSG00000042303 Sgsm3 small G protein signaling modulator 3 protein_coding Mus_musculus

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