C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: poly(A) binding protein, nuclear 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100836 PABPN1 9606 + 14:23321289-23326185 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000216727 PABPN1-001 23321289-23326185 protein_coding
  ENST00000397276 PABPN1-003 23321457-23326163 protein_coding
  ENST00000553960 PABPN1-008 23323263-23324645 retained_intron
  ENST00000554062 PABPN1-007 23322539-23324217 retained_intron
  ENST00000555295 PABPN1-009 23323445-23325334 protein_coding
  ENST00000556809 PABPN1-005 23321814-23323485 retained_intron
  ENST00000556821 PABPN1-004 23321543-23325298 protein_coding
  ENST00000557702 PABPN1-006 23322022-23324378 protein_coding

Homo sapiens EnsemblGRCh38

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Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000216727ENST00000397276ENST00000555295ENST00000556821ENST00000557702
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000216727 52.412±0.00 53.423±0.00 6.745±0.00 24.408±18.12 24.034±18.09 27.248±21.04 13.862±12.05 26.231±24.22 7.816±2.61 22.226±20.33 19.944±16.60 39.907±33.63 44.533±4.91 96.009±0.00
ENST00000397276 N/A 22.282±0.00 N/A 3.726±0.00 9.664±6.08 3.260±0.00 N/A 13.438±11.52 6.241±0.00 9.924±7.61 N/A 24.746±4.52 13.609±3.46 76.311±0.00
ENST00000555295 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 221.710±0.00 258.600±0.00 541.818±0.00
ENST00000556821 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 50.813±0.00 N/A N/A
ENST00000557702 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 135.725±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090C CIL_00090C_0001 VISTA 14:23078458-23681621
CIL_0009BW CIL_0009BW_0001 VISTA 14:23137378-23739005
CIL_0008Q4 CIL_0008Q4_0001 VISTA 14:23138150-23738498
CIL_0008QH CIL_0008QH_0001 VISTA 14:23142404-23743714
CIL_00051H CIL_00051H_0001 CGP 14:23298790-23325369
CIL_00051J CIL_00051J_0001 CGP 14:23306835-23326185
CIL_00051C CIL_00051C_0001 CGP 14:23321289-23352912

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 TAS RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006396 TAS RNA processing
GO:0006936 TAS muscle contraction
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016973 IMP poly(A)+ mRNA export from nucleus
GO:0019048 TAS modulation by virus of host morphology or physiology
GO:0019054 TAS modulation by virus of host process
GO:0019058 TAS viral life cycle
GO:0030529 IDA ribonucleoprotein complex
GO:0031124 TAS mRNA 3'-end processing
GO:0044822 IDA poly(A) RNA binding
GO:0046778 TAS modification by virus of host mRNA processing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045373 pabpn1 poly(A) binding protein, nuclear 1 protein_coding Danio_rerio
ENSMUSG00000022194 Pabpn1 poly(A) binding protein, nuclear 1 protein_coding Mus_musculus

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