C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: spalt-like transcription factor 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000101115 SALL4 9606 - 20:51784042-51802520 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000217086 SALL4-001 51784042-51802520 protein_coding
  ENST00000371539 SALL4-201 51784046-51802509 protein_coding
  ENST00000395997 SALL4-002 51784265-51802475 protein_coding
  ENST00000481363 SALL4-004 51792068-51793078 processed_transcript
  ENST00000483130 SALL4-003 51791983-51801586 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLungOvaryPlacentaTestisENST00000217086ENST00000371539ENST00000395997ENST00000481363
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Lung Ovary Placenta Testis
ENST00000217086 0.009±0.00 0.087±0.00 N/A 0.073±0.05 0.047±0.00 N/A 0.011±0.01 0.175±0.10 N/A 0.395±0.33 0.031±0.00 1.071±0.39
ENST00000371539 N/A 0.073±0.00 0.051±0.00 N/A 0.603±0.00 0.042±0.00 N/A N/A 0.134±0.00 0.918±0.00 0.077±0.00 N/A
ENST00000395997 0.041±0.00 N/A N/A N/A N/A 0.013±0.00 N/A N/A 0.029±0.00 N/A 0.076±0.00 N/A
ENST00000481363 N/A N/A N/A N/A 0.026±0.00 0.266±0.00 N/A N/A 0.143±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007I5 CIL_0007I5_0001 CGP 20:51596514-51802520
CIL_0001H1 CIL_0001H1_0001 CGP 20:51784042-52204308

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000792 IEA heterochromatin
GO:0001701 IEA in utero embryonic development
GO:0001833 IEA inner cell mass cell proliferation
GO:0001843 IEA neural tube closure
GO:0003281 IEA ventricular septum development
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007507 IEA heart development
GO:0009888 IEA tissue development
GO:0019827 IEA stem cell maintenance
GO:0021915 IEA neural tube development
GO:0030326 IEA embryonic limb morphogenesis
GO:0043234 IEA protein complex
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044485 sall4 sal-like 4 (Drosophila) protein_coding Danio_rerio
ENSMUSG00000027547 Sall4 sal-like 4 (Drosophila) protein_coding Mus_musculus

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