C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: histocompatibility (minor) 13
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000101294 HM13 9606 + 20:31514428-31577923 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000335574 HM13-009 31514428-31569567 protein_coding
  ENST00000340852 HM13-011 31514428-31569567 protein_coding
  ENST00000344042 HM13-014 31514521-31561730 protein_coding
  ENST00000398174 HM13-012 31514428-31571606 protein_coding
  ENST00000460225 HM13-018 31514621-31554828 processed_transcript
  ENST00000460389 HM13-002 31548639-31569308 processed_transcript
  ENST00000464173 HM13-010 31549062-31550471 processed_transcript
  ENST00000464508 HM13-022 31547406-31549033 processed_transcript
  ENST00000464661 HM13-026 31547465-31554825 processed_transcript
  ENST00000466766 HM13-015 31514655-31538228 processed_transcript
  ENST00000468559 HM13-024 31554747-31569567 processed_transcript
  ENST00000469097 HM13-006 31545028-31569418 processed_transcript
  ENST00000469126 HM13-019 31538183-31568211 processed_transcript
  ENST00000472128 HM13-008 31549091-31567986 processed_transcript
  ENST00000474466 HM13-023 31554588-31566267 processed_transcript
  ENST00000479096 HM13-025 31547448-31549029 processed_transcript
  ENST00000483310 HM13-001 31549027-31562671 processed_transcript
  ENST00000487281 HM13-007 31566154-31569567 processed_transcript
  ENST00000487964 HM13-021 31547382-31566275 processed_transcript
  ENST00000492709 HM13-020 31538195-31569567 processed_transcript
  ENST00000493364 HM13-005 31566057-31569252 processed_transcript
  ENST00000494153 HM13-004 31548781-31569174 processed_transcript
  ENST00000496438 HM13-017 31514502-31549217 processed_transcript
  ENST00000498035 HM13-013 31514457-31541733 protein_coding
  ENST00000619859 HM13-027 31559616-31577923 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000335574ENST00000340852ENST00000344042ENST00000460389ENST00000464508ENST00000469097ENST00000469126ENST00000492709ENST00000493364ENST00000498035
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000335574 N/A N/A N/A 6.973±4.80 N/A N/A 10.007±0.00 N/A N/A N/A 36.980±0.00 N/A N/A N/A
ENST00000340852 37.959±0.00 51.212±0.00 2.161±0.00 5.545±0.00 21.227±16.16 18.242±15.18 3.235±2.76 38.599±29.43 53.026±50.82 21.476±17.99 N/A 63.491±31.73 111.540±24.58 25.929±8.67
ENST00000344042 N/A N/A 3.198±0.00 N/A N/A N/A 1.415±0.00 9.603±0.00 2.300±0.00 N/A N/A N/A N/A N/A
ENST00000460389 N/A N/A 1.483±0.00 N/A N/A N/A N/A N/A N/A 2.023±0.00 N/A N/A N/A N/A
ENST00000464508 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.314±0.00 N/A N/A N/A
ENST00000469097 25.115±0.00 50.393±0.00 N/A 12.370±0.00 30.923±0.00 27.321±0.00 8.345±0.00 68.860±0.00 69.493±0.00 19.947±0.00 N/A N/A N/A 30.282±0.00
ENST00000469126 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.792±0.00 N/A N/A N/A
ENST00000492709 N/A N/A N/A N/A N/A N/A 0.589±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000493364 N/A N/A N/A N/A 18.827±0.00 N/A N/A N/A N/A N/A N/A 173.034±0.00 86.916±0.00 45.414±0.00
ENST00000498035 N/A N/A 0.407±0.00 0.316±0.00 1.098±0.00 0.591±0.00 0.117±0.00 N/A 0.565±0.00 1.859±1.12 0.299±0.00 1.187±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008K5 CIL_0008K5_0001 VISTA 20:31303913-31904751
CIL_00089Z CIL_00089Z_0001 VISTA 20:31373735-31977079
CIL_0008N4 CIL_0008N4_0001 VISTA 20:31410024-32010895
CIL_0001A0 CIL_0001A0_0001 CGP 20:31475293-31577923

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004190 IEA aspartic-type endopeptidase activity
GO:0005515 IPI protein binding
GO:0005783 ISS endoplasmic reticulum
GO:0005789 IEA endoplasmic reticulum membrane
GO:0005791 IDA rough endoplasmic reticulum
GO:0005886 IEA plasma membrane
GO:0008233 IDA peptidase activity
GO:0009986 ISS cell surface
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0033619 IDA membrane protein proteolysis
GO:0042500 IMP aspartic endopeptidase activity, intramembrane cleaving
GO:0042803 IDA protein homodimerization activity
GO:0071458 IDA integral component of cytoplasmic side of endoplasmic reticulum membrane
GO:0071556 IDA integral component of lumenal side of endoplasmic reticulum membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037846 hm13 histocompatibility (minor) 13 protein_coding Danio_rerio
ENSMUSG00000019188 H13 histocompatibility 13 protein_coding Mus_musculus

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