C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cadherin 20, type 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000101542 CDH20 9606 + 18:61333582-61555773 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000262717 CDH20-001 61333582-61555773 protein_coding
  ENST00000536675 CDH20-201 61490542-61555132 protein_coding
  ENST00000538374 CDH20-002 61334273-61554695 protein_coding
  ENST00000587582 CDH20-003 61549866-61554358 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262717ENST00000536675ENST00000538374ENST00000587582
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262717 N/A N/A 0.094±0.00 3.136±0.00 1.124±0.00 N/A 0.035±0.00 0.065±0.03 N/A 0.022±0.00 1.214±0.00 0.018±0.01 0.058±0.00 N/A
ENST00000536675 0.143±0.00 N/A N/A 2.042±0.95 0.442±0.00 N/A N/A N/A N/A N/A N/A N/A 0.031±0.01 0.118±0.01
ENST00000538374 N/A 0.027±0.00 N/A N/A 0.134±0.00 0.056±0.00 N/A 0.022±0.00 0.120±0.00 N/A N/A 0.014±0.00 N/A N/A
ENST00000587582 N/A N/A 1.765±0.00 N/A N/A N/A 0.800±0.00 N/A 0.038±0.00 N/A N/A N/A 0.073±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007FG CIL_0007FG_0001 CGP 18:61333582-61894247

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000050840 Cdh20 cadherin 20 protein_coding Mus_musculus

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