C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosome binding factor A (putative)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000101546 RBFA 9606 + 18:80034358-80046397 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000262197 RBFA-002 80034466-80046397 protein_coding
  ENST00000306735 RBFA-001 80034358-80046392 protein_coding
  ENST00000586847 RBFA-006 80034389-80037504 processed_transcript
  ENST00000591612 RBFA-003 80034461-80036047 retained_intron
  ENST00000593019 RBFA-004 80041302-80046332 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262197ENST00000306735ENST00000591612ENST00000593019
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262197 6.960±0.00 6.539±0.00 N/A 2.833±1.57 8.338±0.00 2.089±0.00 N/A 3.167±0.00 N/A 1.926±0.00 N/A N/A 1.578±0.00 7.255±0.00
ENST00000306735 7.523±0.00 4.713±0.00 N/A 1.810±0.37 6.608±4.33 1.125±0.00 5.201±3.16 5.382±2.26 7.289±5.21 2.756±0.00 7.818±4.82 8.687±4.64 8.280±1.44 7.401±0.30
ENST00000591612 N/A N/A 0.742±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000593019 N/A N/A 1.601±0.00 0.970±0.00 N/A 2.117±0.00 N/A N/A 0.673±0.00 0.804±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Y9 CIL_0007Y9_0001 VISTA 18:79552100-80156263
CIL_000013 CIL_000013_0002 CGP 18:80034358-80147523

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005739 IEA mitochondrion
GO:0006364 IEA rRNA processing
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000073705 rbfa ribosome binding factor A protein_coding Danio_rerio
ENSMUSG00000024570 Rbfa ribosome binding factor A protein_coding Mus_musculus

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