C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: stromal antigen 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000101972 STAG2 9606 + X:123960212-124422664 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000218089 STAG2-006 123960519-124101498 protein_coding
  ENST00000371144 STAG2-008 123961739-124100902 protein_coding
  ENST00000371145 STAG2-019 123961738-124100902 protein_coding
  ENST00000371157 STAG2-001 123961718-124102656 protein_coding
  ENST00000371160 STAG2-018 123961314-124102656 protein_coding
  ENST00000394477 STAG2-020 123960212-124031048 protein_coding
  ENST00000394478 STAG2-017 123963170-124037585 protein_coding
  ENST00000428941 STAG2-014 123962033-124045208 protein_coding
  ENST00000435103 STAG2-011 123961318-124042645 protein_coding
  ENST00000435215 STAG2-013 123962094-124045324 protein_coding
  ENST00000455404 STAG2-002 123960519-124062907 protein_coding
  ENST00000458176 STAG2-005 123961739-124045208 nonsense_mediated_decay
  ENST00000458700 STAG2-007 123960864-124025915 protein_coding
  ENST00000466748 STAG2-012 123961775-124063991 processed_transcript
  ENST00000469481 STAG2-010 123960695-124422664 processed_transcript
  ENST00000471107 STAG2-015 123961823-124063205 processed_transcript
  ENST00000475602 STAG2-016 124093913-124095495 processed_transcript
  ENST00000483575 STAG2-009 123960560-124062994 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000371144ENST00000371145ENST00000371157ENST00000371160ENST00000466748
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000371144 5.696±0.00 3.235±0.00 N/A 3.664±0.34 4.411±0.58 1.617±0.53 4.885±0.00 5.627±0.00 10.683±0.00 3.149±0.00 6.881±1.01 N/A N/A
ENST00000371145 N/A N/A 3.234±0.21 7.064±0.00 4.080±0.00 1.769±0.00 N/A 2.328±0.00 N/A N/A 4.553±1.58 2.525±0.00 1.673±0.00
ENST00000371157 4.048±0.00 2.331±0.00 2.813±0.36 3.648±0.00 5.341±1.41 1.584±0.00 4.980±1.09 5.829±0.00 6.634±3.20 N/A 9.667±0.49 1.853±1.07 2.132±0.08
ENST00000371160 N/A N/A N/A 2.623±0.00 N/A N/A N/A N/A N/A 1.579±0.00 N/A 1.855±0.00 N/A
ENST00000466748 N/A 8.663±0.00 N/A N/A N/A N/A N/A 15.181±0.00 N/A 6.034±0.00 18.424±0.00 15.816±0.00 8.157±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000GB CIL_0000GB_0002 CGP X:123859724-124422664
CIL_0007YQ CIL_0007YQ_0001 VISTA X:123916977-124518737
CIL_0000AX CIL_0000AX_0001 CGP X:123960212-124422664

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0000775 TAS chromosome, centromeric region
GO:0000785 IDA chromatin
GO:0003682 IEA chromatin binding
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005694 TAS chromosome
GO:0005730 IDA nucleolus
GO:0005829 TAS cytosol
GO:0005886 IDA plasma membrane
GO:0007062 IMP sister chromatid cohesion
GO:0007067 IEA mitotic nuclear division
GO:0015629 IDA actin cytoskeleton
GO:0016020 IDA membrane
GO:0019827 IEA stem cell maintenance
GO:0032876 IMP negative regulation of DNA endoreduplication
GO:0045111 IDA intermediate filament cytoskeleton
GO:0051321 IEA meiotic cell cycle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053668 stag2b stromal antigen 2b protein_coding Danio_rerio
ENSMUSG00000025862 Stag2 stromal antigen 2 protein_coding Mus_musculus

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