C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: retinoblastoma binding protein 7
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000102054 RBBP7 9606 - X:16839283-16870414 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000330735 RBBP7-003 16844650-16852280 retained_intron
  ENST00000380084 RBBP7-008 16844654-16869886 protein_coding
  ENST00000380087 RBBP7-006 16844341-16870414 protein_coding
  ENST00000404022 RBBP7-010 16844690-16870361 protein_coding
  ENST00000416035 RBBP7-004 16852046-16863021 protein_coding
  ENST00000425696 RBBP7-007 16839283-16852065 protein_coding
  ENST00000444437 RBBP7-002 16848991-16857602 protein_coding
  ENST00000465244 RBBP7-011 16844654-16852152 retained_intron
  ENST00000468092 RBBP7-013 16862957-16870344 protein_coding
  ENST00000481586 RBBP7-009 16845871-16852970 retained_intron
  ENST00000486166 RBBP7-001 16852552-16858803 retained_intron
  ENST00000493145 RBBP7-012 16869116-16870153 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000330735ENST00000380084ENST00000380087ENST00000404022ENST00000481586
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000330735 N/A N/A N/A 9.450±0.00 N/A N/A N/A N/A N/A N/A N/A 15.768±0.00 N/A 28.064±0.00
ENST00000380084 10.279±0.00 20.065±0.00 N/A 9.358±0.00 12.045±0.00 8.760±5.94 7.768±6.06 7.608±4.06 6.466±0.00 7.956±0.00 11.368±0.00 22.341±10.08 27.885±2.51 31.307±0.00
ENST00000380087 N/A N/A 3.909±0.00 4.182±0.01 4.135±0.00 3.502±0.00 3.319±0.00 N/A 13.886±0.00 6.222±0.00 7.391±0.00 28.331±18.28 8.430±0.32 8.668±0.00
ENST00000404022 16.565±0.00 27.444±0.00 N/A 19.297±0.00 11.170±0.00 14.653±10.17 21.948±0.00 13.274±10.41 6.091±0.00 20.439±0.00 7.675±4.51 26.185±8.40 38.967±16.44 34.790±3.04
ENST00000481586 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 113.750±0.00 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0003723 IEA RNA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006260 IEA DNA replication
GO:0006325 TAS chromatin organization
GO:0006334 TAS nucleosome assembly
GO:0006351 IEA transcription, DNA-templated
GO:0007275 TAS multicellular organismal development
GO:0008283 TAS cell proliferation
GO:0016581 IDA NuRD complex
GO:0030308 IDA negative regulation of cell growth
GO:0034080 TAS CENP-A containing nucleosome assembly
GO:0035098 IDA ESC/E(Z) complex
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0070370 IDA cellular heat acclimation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015208 rbb4l retinoblastoma binding protein 4, like protein_coding Danio_rerio
ENSMUSG00000031353 Rbbp7 retinoblastoma binding protein 7 protein_coding Mus_musculus

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