C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: suppressor of Ty 20 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000102710 SUPT20H 9606 - 13:37009312-37059713 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000350612 SUPT20H-016 37009494-37059686 protein_coding
  ENST00000356185 SUPT20H-007 37009494-37059650 protein_coding
  ENST00000360252 SUPT20H-001 37009316-37059713 protein_coding
  ENST00000464572 SUPT20H-002 37038035-37059639 retained_intron
  ENST00000464744 SUPT20H-017 37009617-37059432 protein_coding
  ENST00000466563 SUPT20H-012 37022223-37028231 processed_transcript
  ENST00000469488 SUPT20H-009 37009494-37026798 protein_coding
  ENST00000470359 SUPT20H-003 37040417-37059639 processed_transcript
  ENST00000471868 SUPT20H-022 37046864-37047937 retained_intron
  ENST00000472948 SUPT20H-024 37009494-37010852 retained_intron
  ENST00000473871 SUPT20H-020 37009497-37013906 retained_intron
  ENST00000475892 SUPT20H-021 37009493-37059649 protein_coding
  ENST00000476109 SUPT20H-004 37040404-37059639 processed_transcript
  ENST00000476539 SUPT20H-015 37024134-37028308 processed_transcript
  ENST00000478911 SUPT20H-023 37025830-37028304 retained_intron
  ENST00000483241 SUPT20H-005 37040404-37048600 processed_transcript
  ENST00000484078 SUPT20H-019 37009312-37024947 retained_intron
  ENST00000488590 SUPT20H-006 37051542-37059468 processed_transcript
  ENST00000490602 SUPT20H-014 37024151-37033479 processed_transcript
  ENST00000490716 SUPT20H-018 37009312-37059451 nonsense_mediated_decay
  ENST00000493537 SUPT20H-011 37023549-37051559 retained_intron
  ENST00000495071 SUPT20H-013 37009316-37059686 nonsense_mediated_decay
  ENST00000497318 SUPT20H-008 37040405-37059629 protein_coding
  ENST00000542180 SUPT20H-201 37009500-37051646 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000350612ENST00000360252ENST00000464744ENST00000466563ENST00000469488ENST00000475892ENST00000490716ENST00000493537ENST00000495071ENST00000542180
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000350612 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.017±0.00 N/A N/A N/A
ENST00000360252 N/A N/A 1.646±0.00 3.154±0.00 2.401±0.00 N/A N/A N/A 1.835±0.00 0.350±0.00 4.681±0.00 2.474±0.00 16.174±0.00
ENST00000464744 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.107±0.00
ENST00000466563 N/A N/A N/A N/A N/A N/A 4.188±0.00 N/A N/A N/A N/A N/A N/A
ENST00000469488 11.991±0.00 N/A 4.304±0.00 N/A N/A 3.899±0.00 10.147±0.00 N/A 5.370±0.00 N/A N/A N/A 31.619±0.00
ENST00000475892 N/A 2.105±0.00 N/A N/A 2.324±0.65 N/A N/A N/A 2.832±0.00 N/A 5.650±1.21 3.442±0.71 12.124±0.00
ENST00000490716 N/A N/A 1.883±0.00 1.658±0.00 1.936±0.00 1.220±0.00 N/A 1.291±0.00 N/A 1.286±0.00 1.991±0.00 N/A N/A
ENST00000493537 N/A 3.679±0.00 N/A 3.003±0.00 N/A 1.266±0.00 N/A 4.254±0.00 N/A 0.887±0.00 5.658±0.00 N/A N/A
ENST00000495071 N/A 1.391±0.00 1.835±0.00 1.805±0.00 1.320±0.00 0.504±0.00 2.254±1.54 N/A 1.166±0.00 N/A 4.018±0.00 N/A N/A
ENST00000542180 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.065±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000PE CIL_0000PE_0002 CGP 13:36949775-37009613
CIL_0006CQ CIL_0006CQ_0002 CGP 13:36998816-37059713

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000124 IEA SAGA complex
GO:0003712 IEA transcription cofactor activity
GO:0005515 IPI protein binding
GO:0006325 TAS chromatin organization
GO:0006914 IEA autophagy
GO:0007369 IEA gastrulation
GO:0070461 IDA SAGA-type complex
GO:2001141 IEA regulation of RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078658 supt20 suppressor of Ty 20 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000027751 Supt20 suppressor of Ty 20 protein_coding Mus_musculus
ENSMUSG00000095832 Supt20 suppressor of Ty 20 protein_coding Mus_musculus

Loading