C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: katanin p60 subunit A-like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000102781 KATNAL1 9606 - 13:30202630-30307484 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000380615 KATNAL1-001 30202630-30307484 protein_coding
  ENST00000380617 KATNAL1-002 30208480-30307026 protein_coding
  ENST00000414289 KATNAL1-004 30255480-30306856 protein_coding
  ENST00000441394 KATNAL1-003 30255488-30307044 protein_coding
  ENST00000480854 KATNAL1-005 30208725-30210664 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000380615ENST00000380617
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000380615 1.248±0.00 0.706±0.00 3.545±0.31 1.478±0.46 1.534±1.29 2.583±1.01 0.552±0.00 1.322±0.20 0.572±0.49 0.550±0.17 0.472±0.00 3.418±0.05
ENST00000380617 2.149±0.00 N/A 14.004±0.00 3.219±0.18 2.173±0.00 4.887±0.00 5.580±0.00 3.356±0.00 0.982±0.30 1.196±0.48 0.438±0.05 22.121±14.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003E1 CIL_0003E1_0001 CGP 13:29764371-30307484

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0005874 IEA microtubule
GO:0006281 IEA DNA repair
GO:0006310 IEA DNA recombination
GO:0007283 IEA spermatogenesis
GO:0008017 IEA microtubule binding
GO:0008568 IEA microtubule-severing ATPase activity
GO:0009378 IEA four-way junction helicase activity
GO:0015630 IEA microtubule cytoskeleton
GO:0051013 IEA microtubule severing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000041298 Katnal1 katanin p60 subunit A-like 1 protein_coding Mus_musculus

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