C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TOX high mobility group box family member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000103460 TOX3 9606 - 16:52438005-52547802 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000219746 TOX3-003 52438008-52547008 protein_coding
  ENST00000407228 TOX3-002 52438005-52547802 protein_coding
  ENST00000563091 TOX3-004 52450348-52547419 protein_coding
  ENST00000566696 TOX3-006 52438006-52445726 retained_intron
  ENST00000568436 TOX3-005 52464018-52546840 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000219746ENST00000407228ENST00000566696
Transcript ID Adipose Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000219746 0.801±0.00 N/A 0.855±0.00 0.444±0.00 0.432±0.00 5.272±0.00 0.896±0.00 N/A 0.011±0.00 1.777±2.19 0.058±0.05 0.309±0.20
ENST00000407228 N/A N/A N/A N/A N/A N/A N/A 0.051±0.00 0.002±0.00 0.588±0.00 N/A 0.106±0.00
ENST00000566696 N/A 0.436±0.00 N/A 0.267±0.00 N/A N/A N/A 0.032±0.00 N/A 0.289±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ON CIL_0007ON_0002 UCNEbase 16:51906374-55391377
CIL_0007X1 CIL_0007X1_0001 VISTA 16:51908698-52510165
CIL_0008J3 CIL_0008J3_0001 VISTA 16:52102343-52703464
CIL_00085C CIL_00085C_0001 VISTA 16:52112138-52713325
CIL_0008LS CIL_0008LS_0001 VISTA 16:52134617-52737850
CIL_0008J0 CIL_0008J0_0001 VISTA 16:52169922-52771014
CIL_0008J1 CIL_0008J1_0001 VISTA 16:52196629-52798059
CIL_000859 CIL_000859_0001 VISTA 16:52217685-52818923
CIL_0007WW CIL_0007WW_0001 VISTA 16:52223494-52824873
CIL_0008U8 CIL_0008U8_0001 VISTA 16:52406202-53010959
CIL_00077Q CIL_00077Q_0001 CGP 16:52438005-53329150

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006915 IEA apoptotic process
GO:0034056 IDA estrogen response element binding
GO:0042803 IDA protein homodimerization activity
GO:0043524 IDA negative regulation of neuron apoptotic process
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0051219 IPI phosphoprotein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000073957 tox3 TOX high mobility group box family member 3 protein_coding Danio_rerio
ENSMUSG00000043668 Tox3 TOX high mobility group box family member 3 protein_coding Mus_musculus

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