C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: retinoblastoma-like 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000103479 RBL2 9606 + 16:53433977-53491649 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000262133 RBL2-001 53434420-53491649 protein_coding
  ENST00000379935 RBL2-010 53445781-53491648 processed_transcript
  ENST00000544405 RBL2-002 53435619-53470079 protein_coding
  ENST00000544545 RBL2-201 53454226-53491647 protein_coding
  ENST00000561512 RBL2-007 53461769-53464877 retained_intron
  ENST00000562837 RBL2-009 53466774-53470257 retained_intron
  ENST00000562850 RBL2-008 53464291-53466109 retained_intron
  ENST00000564605 RBL2-006 53479546-53480755 retained_intron
  ENST00000567964 RBL2-004 53433977-53453463 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262133ENST00000544405ENST00000544545
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262133 4.794±0.00 3.607±0.00 5.534±0.00 5.046±0.00 1.564±0.00 4.298±0.00 6.881±0.00 2.984±0.00 2.485±0.00 3.640±0.97 3.422±0.36 7.334±0.00
ENST00000544405 4.013±0.00 4.865±0.00 10.132±0.11 8.469±0.00 2.645±0.00 8.272±0.00 9.840±0.00 17.697±0.00 4.212±0.00 7.813±0.00 N/A N/A
ENST00000544545 2.837±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 3.671±0.00 3.365±0.00 17.430±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ON CIL_0007ON_0002 UCNEbase 16:51906374-55391377
CIL_0007PV CIL_0007PV_0001 VISTA 16:53229142-53830543
CIL_0008IZ CIL_0008IZ_0001 VISTA 16:53244122-53845073
CIL_0007S1 CIL_0007S1_0001 VISTA 16:53392404-53993644
CIL_0007S0 CIL_0007S0_0001 VISTA 16:53426386-54027245
CIL_0005OB CIL_0005OB_0001 CGP 16:53433977-53504411

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005667 IEA transcription factor complex
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0007049 IEA cell cycle
GO:0016568 IEA chromatin modification
GO:0043550 IDA regulation of lipid kinase activity
GO:0051726 IEA regulation of cell cycle
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045636 rbl2 retinoblastoma-like 2 (p130) protein_coding Danio_rerio
ENSMUSG00000031666 Rbl2 retinoblastoma-like 2 protein_coding Mus_musculus

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