C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RPGRIP1-like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000103494 RPGRIP1L 9606 - 16:53597683-53703938 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000262135 RPGRIP1L-003 53597683-53703889 protein_coding
  ENST00000379925 RPGRIP1L-009 53600778-53703846 protein_coding
  ENST00000562230 RPGRIP1L-005 53671551-53703844 protein_coding
  ENST00000562588 RPGRIP1L-008 53692227-53703830 protein_coding
  ENST00000563746 RPGRIP1L-007 53601781-53703847 protein_coding
  ENST00000564374 RPGRIP1L-001 53605395-53703889 protein_coding
  ENST00000565343 RPGRIP1L-012 53653451-53659893 retained_intron
  ENST00000566096 RPGRIP1L-010 53695631-53703938 protein_coding
  ENST00000568009 RPGRIP1L-013 53635441-53638374 processed_transcript
  ENST00000568653 RPGRIP1L-002 53693312-53703847 protein_coding
  ENST00000569716 RPGRIP1L-006 53696213-53703810 protein_coding
  ENST00000621565 RPGRIP1L-201 53599912-53703859 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262135ENST00000379925ENST00000562230ENST00000562588ENST00000563746ENST00000564374ENST00000565343ENST00000566096ENST00000568009ENST00000568653ENST00000621565
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262135 N/A N/A N/A 0.412±0.03 0.067±0.00 0.041±0.00 0.030±0.00 N/A 0.071±0.00 N/A N/A 0.192±0.07 0.100±0.00 N/A
ENST00000379925 0.046±0.00 N/A N/A N/A N/A N/A N/A 0.498±0.00 0.070±0.06 N/A N/A 0.282±0.00 N/A 1.827±0.00
ENST00000562230 N/A N/A N/A 1.163±0.00 N/A 0.586±0.00 N/A N/A 1.100±0.00 N/A N/A 0.789±0.00 N/A N/A
ENST00000562588 N/A N/A N/A N/A N/A N/A 0.529±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000563746 0.176±0.00 N/A N/A 0.346±0.00 0.182±0.00 0.164±0.06 N/A N/A 0.153±0.13 0.596±0.17 0.165±0.00 0.475±0.23 0.135±0.05 2.321±0.17
ENST00000564374 0.111±0.00 N/A N/A N/A N/A N/A 0.138±0.00 0.052±0.00 0.028±0.00 N/A N/A N/A 0.111±0.00 6.270±0.00
ENST00000565343 N/A N/A N/A N/A N/A N/A N/A 0.052±0.00 N/A N/A N/A N/A N/A N/A
ENST00000566096 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.333±0.00 N/A
ENST00000568009 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.798±0.00 0.972±0.00 16.829±0.00
ENST00000568653 N/A 0.345±0.00 N/A 0.597±0.00 0.354±0.00 0.184±0.00 0.092±0.00 N/A 0.098±0.00 0.311±0.00 0.103±0.00 0.434±0.00 0.219±0.06 N/A
ENST00000621565 0.057±0.00 0.099±0.00 0.242±0.00 0.734±0.00 0.313±0.11 0.258±0.00 0.088±0.00 0.026±0.00 0.092±0.00 0.279±0.00 0.062±0.00 0.315±0.13 0.099±0.02 0.927±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ON CIL_0007ON_0002 UCNEbase 16:51906374-55391377
CIL_0007PV CIL_0007PV_0001 VISTA 16:53229142-53830543
CIL_0008IZ CIL_0008IZ_0001 VISTA 16:53244122-53845073
CIL_0007S1 CIL_0007S1_0001 VISTA 16:53392404-53993644
CIL_0007S0 CIL_0007S0_0001 VISTA 16:53426386-54027245
CIL_0005OC CIL_0005OC_0001 CGP 16:53491040-53703938
CIL_0007SA CIL_0007SA_0001 VISTA 16:53595301-54195912
CIL_0005OE CIL_0005OE_0001 CGP 16:53597683-54121941

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001701 IEA in utero embryonic development
GO:0001736 IEA establishment of planar polarity
GO:0001822 IEA kidney development
GO:0001889 IEA liver development
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005813 IDA centrosome
GO:0005911 IDA cell-cell junction
GO:0005923 IEA tight junction
GO:0005929 IDA cilium
GO:0005930 IDA axoneme
GO:0007163 IEA establishment or maintenance of cell polarity
GO:0007368 IEA determination of left/right symmetry
GO:0007420 IEA brain development
GO:0008589 IEA regulation of smoothened signaling pathway
GO:0021532 IEA neural tube patterning
GO:0021537 IEA telencephalon development
GO:0021549 IEA cerebellum development
GO:0021670 IEA lateral ventricle development
GO:0021772 IEA olfactory bulb development
GO:0022038 IEA corpus callosum development
GO:0031870 IPI thromboxane A2 receptor binding
GO:0035108 IEA limb morphogenesis
GO:0035115 IEA embryonic forelimb morphogenesis
GO:0035116 IEA embryonic hindlimb morphogenesis
GO:0035869 IEA ciliary transition zone
GO:0036064 IDA ciliary basal body
GO:0042384 IEA cilium assembly
GO:0043010 IEA camera-type eye development
GO:0043584 IEA nose development
GO:0045744 IDA negative regulation of G-protein coupled receptor protein signaling pathway
GO:0060039 IEA pericardium development
GO:0060271 IEA cilium morphogenesis
GO:0060322 IEA head development
GO:0090102 IEA cochlea development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000051754 rpgrip1l RPGRIP1-like protein_coding Danio_rerio
ENSMUSG00000033282 Rpgrip1l Rpgrip1-like protein_coding Mus_musculus

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