C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: DnaJ (Hsp40) homolog, subfamily C, member 17
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000104129 DNAJC17 9606 - 15:40765155-40807477 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000220496 DNAJC17-001 40765155-40807477 protein_coding
  ENST00000558727 DNAJC17-010 40767913-40770289 processed_transcript
  ENST00000558769 DNAJC17-008 40775577-40776886 retained_intron
  ENST00000559238 DNAJC17-005 40767878-40807473 nonsense_mediated_decay
  ENST00000559310 DNAJC17-006 40774365-40807457 nonsense_mediated_decay
  ENST00000560065 DNAJC17-011 40774253-40807452 nonsense_mediated_decay
  ENST00000560301 DNAJC17-002 40775258-40807477 retained_intron
  ENST00000560645 DNAJC17-004 40773782-40807473 nonsense_mediated_decay
  ENST00000561018 DNAJC17-003 40774356-40807473 nonsense_mediated_decay
  ENST00000561044 DNAJC17-007 40779554-40780567 processed_transcript
  ENST00000561110 DNAJC17-009 40767873-40775621 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000220496ENST00000558769ENST00000559310ENST00000561110
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000220496 5.564±0.00 2.641±0.00 N/A 1.795±0.97 3.956±0.00 1.287±0.51 0.694±0.35 4.172±0.00 4.457±3.92 6.313±0.00 0.646±0.00 4.320±2.19 4.188±0.96 1.896±0.68
ENST00000558769 N/A N/A 3.121±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559310 N/A N/A N/A 4.061±0.00 2.942±0.00 N/A 1.015±0.00 N/A N/A 2.198±0.00 N/A N/A N/A N/A
ENST00000561110 N/A 12.079±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00070C CIL_00070C_0001 CGP 15:40735884-40767710
CIL_00070D CIL_00070D_0001 CGP 15:40764020-40807477
CIL_000793 CIL_000793_0001 CGP 15:40765155-40807477

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:1901998 IEA toxin transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000026561 dnajc17 DnaJ (Hsp40) homolog, subfamily C, member 17 protein_coding Danio_rerio
ENSMUSG00000034278 Dnajc17 DnaJ (Hsp40) homolog, subfamily C, member 17 protein_coding Mus_musculus

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