C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transient receptor potential cation channel, subfamily A, member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000104321 TRPA1 9606 - 8:72019917-72075617 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000262209 TRPA1-001 72021251-72075617 protein_coding
  ENST00000519720 TRPA1-006 72034310-72041345 processed_transcript
  ENST00000520596 TRPA1-007 72023129-72023870 processed_transcript
  ENST00000520788 TRPA1-004 72053389-72055539 retained_intron
  ENST00000522271 TRPA1-005 72038766-72046545 retained_intron
  ENST00000523582 TRPA1-002 72019917-72065558 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonHeartKidneyLiverMuscleOvaryENST00000262209ENST00000520788ENST00000523582
Transcript ID Bladder Breast Colon Heart Kidney Liver Muscle Ovary
ENST00000262209 0.068±0.00 0.733±0.00 1.308±0.83 N/A N/A N/A N/A 1.041±0.46
ENST00000520788 N/A N/A N/A 1.596±0.00 2.472±0.00 0.265±0.00 0.835±0.00 N/A
ENST00000523582 N/A N/A N/A N/A N/A 4.269±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003FQ CIL_0003FQ_0001 CGP 8:71841549-72075617
CIL_0005BY CIL_0005BY_0002 CGP 8:72019917-72938349

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005262 IEA calcium channel activity
GO:0005515 IEA protein binding
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006811 TAS:IEA ion transport
GO:0006816 IEA calcium ion transport
GO:0009409 IEA response to cold
GO:0015267 TAS channel activity
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0032421 IEA stereocilium bundle
GO:0034220 TAS ion transmembrane transport
GO:0042493 IEA response to drug
GO:0042542 IEA response to hydrogen peroxide
GO:0048265 IEA response to pain
GO:0050955 IEA thermoception
GO:0050966 IEA detection of mechanical stimulus involved in sensory perception of pain
GO:0050968 IEA detection of chemical stimulus involved in sensory perception of pain
GO:0055085 TAS:IEA transmembrane transport
GO:0070588 TAS calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016699 trpa1a transient receptor potential cation channel, subfamily A, member 1a protein_coding Danio_rerio
ENSDARG00000031875 trpa1b transient receptor potential cation channel, subfamily A, member 1b protein_coding Danio_rerio
ENSMUSG00000032769 Trpa1 transient receptor potential cation channel, subfamily A, member 1 protein_coding Mus_musculus

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