C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tissue specific transplantation antigen P35B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000104522 TSTA3 9606 - 8:143612618-143618048 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000425753 TSTA3-001 143612618-143617566 protein_coding
  ENST00000524719 TSTA3-016 143612618-143613607 protein_coding
  ENST00000525274 TSTA3-014 143614405-143616726 retained_intron
  ENST00000526290 TSTA3-005 143614821-143618048 protein_coding
  ENST00000527006 TSTA3-012 143614863-143616464 protein_coding
  ENST00000527549 TSTA3-013 143614647-143617507 retained_intron
  ENST00000527677 TSTA3-017 143612621-143613391 retained_intron
  ENST00000528920 TSTA3-015 143612618-143614385 retained_intron
  ENST00000529048 TSTA3-009 143613529-143617474 protein_coding
  ENST00000529064 TSTA3-004 143612618-143617482 protein_coding
  ENST00000529899 TSTA3-007 143615886-143617549 retained_intron
  ENST00000530474 TSTA3-011 143614364-143617511 nonsense_mediated_decay
  ENST00000531006 TSTA3-006 143615943-143617552 retained_intron
  ENST00000531473 TSTA3-003 143612618-143617504 retained_intron
  ENST00000532308 TSTA3-008 143613770-143617532 retained_intron
  ENST00000533817 TSTA3-010 143614322-143617300 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000425753ENST00000525274ENST00000527549ENST00000529048ENST00000529064ENST00000530474ENST00000531473ENST00000532308
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000425753 19.219±0.00 39.114±0.00 N/A 4.950±3.12 18.469±0.00 8.824±7.32 9.578±0.00 30.193±0.00 30.968±29.35 22.345±0.00 20.520±0.00 40.424±24.10 37.664±8.85 43.302±3.22
ENST00000525274 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.420±0.00 N/A N/A N/A
ENST00000527549 N/A N/A 0.843±0.00 N/A N/A 1.989±0.00 0.644±0.00 N/A 1.321±0.00 2.253±0.00 N/A 7.837±0.00 N/A N/A
ENST00000529048 N/A N/A 1.884±0.00 N/A N/A N/A N/A 6.043±0.00 N/A 0.639±0.00 N/A 30.281±0.00 13.076±0.00 24.132±0.00
ENST00000529064 5.672±0.00 N/A 1.252±0.00 3.178±0.00 8.846±0.00 N/A 0.615±0.00 1.446±0.00 N/A 1.448±0.00 N/A 6.343±4.09 9.084±0.00 N/A
ENST00000530474 N/A N/A N/A 1.365±0.00 N/A 2.299±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531473 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.521±0.00 N/A N/A N/A N/A
ENST00000532308 N/A N/A N/A N/A N/A 6.083±0.00 N/A N/A 0.596±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008C2 CIL_0008C2_0001 VISTA 8:143231340-143832399
CIL_0002GN CIL_0002GN_0001 CGP 8:143603913-143618048
CIL_0002GM CIL_0002GM_0001 CGP 8:143612618-143656418

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0005737 IC cytoplasm
GO:0007159 NAS leukocyte cell-cell adhesion
GO:0008152 IEA metabolic process
GO:0009055 TAS electron carrier activity
GO:0016853 IEA isomerase activity
GO:0019673 IDA GDP-mannose metabolic process
GO:0019835 IEA cytolysis
GO:0042351 IEA 'de novo' GDP-L-fucose biosynthetic process
GO:0042356 TAS GDP-4-dehydro-D-rhamnose reductase activity
GO:0050577 IDA GDP-L-fucose synthase activity
GO:0050662 IEA coenzyme binding
GO:0055114 IEA oxidation-reduction process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000039666 tsta3 tissue specific transplantation antigen P35B protein_coding Danio_rerio
ENSDARG00000039669 TSTA3 (2 of 3) tissue specific transplantation antigen P35B protein_coding Danio_rerio
ENSDARG00000042661 TSTA3 (3 of 3) tissue specific transplantation antigen P35B protein_coding Danio_rerio
ENSMUSG00000022570 Tsta3 tissue specific transplantation antigen P35B protein_coding Mus_musculus

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