C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: R3H domain and coiled-coil containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000104679 R3HCC1 9606 + 8:23270120-23296279 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000265806 R3HCC1-003 23287908-23296279 protein_coding
  ENST00000411463 R3HCC1-201 23287929-23296121 protein_coding
  ENST00000517633 R3HCC1-009 23270120-23289034 processed_transcript
  ENST00000518454 R3HCC1-002 23287908-23296121 protein_coding
  ENST00000518840 R3HCC1-004 23288184-23290288 protein_coding
  ENST00000519952 R3HCC1-006 23288124-23291468 protein_coding
  ENST00000520480 R3HCC1-008 23290413-23295630 protein_coding
  ENST00000521588 R3HCC1-005 23288422-23290468 protein_coding
  ENST00000522012 R3HCC1-001 23287908-23296121 processed_transcript
  ENST00000523720 R3HCC1-007 23290976-23293373 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000265806ENST00000411463ENST00000518454ENST00000518840ENST00000519952ENST00000520480ENST00000521588
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000265806 2.269±0.00 N/A 1.057±0.00 2.120±0.00 10.806±0.00 0.616±0.00 N/A N/A 3.942±0.00 N/A N/A 9.722±9.27 14.204±0.00 N/A
ENST00000411463 4.567±0.00 10.230±0.00 N/A 5.718±4.79 10.888±0.00 8.595±0.00 4.953±4.46 7.173±3.66 4.515±2.18 5.497±2.43 9.929±0.00 9.625±2.76 6.345±3.68 22.526±7.39
ENST00000518454 N/A N/A N/A N/A N/A N/A N/A 0.721±0.00 N/A N/A N/A 0.571±0.00 N/A N/A
ENST00000518840 N/A N/A 0.982±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.005±0.00 N/A N/A
ENST00000519952 N/A N/A N/A 2.539±0.00 0.464±0.00 N/A N/A N/A 0.820±0.00 N/A N/A N/A N/A N/A
ENST00000520480 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.836±0.00 11.267±0.00 37.650±0.00
ENST00000521588 N/A N/A N/A N/A N/A N/A 1.105±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008FQ CIL_0008FQ_0001 VISTA 8:23193785-23795287
CIL_0007YD CIL_0007YD_0001 VISTA 8:23207989-23809472
CIL_00016U CIL_00016U_0002 CGP 8:23270120-23425328

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000088146 r3hcc1 R3H domain and coiled-coil containing 1 protein_coding Danio_rerio
ENSMUSG00000034194 R3hcc1 R3H domain and coiled-coil containing 1 protein_coding Mus_musculus

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