C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tubulin, beta 4A class IVa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000104833 TUBB4A 9606 - 19:6494319-6502848 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000264071 TUBB4A-001 6494319-6502584 protein_coding
  ENST00000540257 TUBB4A-201 6494321-6502293 protein_coding
  ENST00000594075 TUBB4A-009 6495807-6502309 protein_coding
  ENST00000594276 TUBB4A-010 6495722-6502309 protein_coding
  ENST00000594290 TUBB4A-012 6496170-6502309 nonsense_mediated_decay
  ENST00000595324 TUBB4A-011 6495905-6502309 nonsense_mediated_decay
  ENST00000596291 TUBB4A-014 6496061-6501787 protein_coding
  ENST00000596926 TUBB4A-013 6496142-6502309 protein_coding
  ENST00000597686 TUBB4A-005 6496131-6502844 protein_coding
  ENST00000598006 TUBB4A-008 6496016-6502337 protein_coding
  ENST00000598635 TUBB4A-006 6496179-6502803 protein_coding
  ENST00000600216 TUBB4A-015 6495808-6502309 protein_coding
  ENST00000601152 TUBB4A-007 6495959-6502338 protein_coding
  ENST00000601640 TUBB4A-004 6496176-6502848 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000264071ENST00000540257ENST00000594075ENST00000596926ENST00000598006ENST00000600216
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000264071 0.132±0.00 0.268±0.00 0.086±0.00 298.033±289.01 0.427±0.00 1.059±0.83 0.745±0.00 1.063±0.00 0.191±0.00 N/A N/A 0.759±0.00 0.800±0.00 18.497±8.19
ENST00000540257 0.402±0.00 0.126±0.00 0.381±0.00 26.896±0.00 N/A N/A N/A 0.849±0.00 0.283±0.00 0.164±0.08 N/A 0.111±0.00 0.256±0.00 N/A
ENST00000594075 N/A N/A 0.333±0.00 N/A N/A N/A N/A N/A 0.620±0.00 N/A N/A N/A N/A N/A
ENST00000596926 0.623±0.00 1.919±0.00 N/A N/A 0.807±0.00 N/A 1.071±0.00 N/A N/A 1.504±0.00 0.163±0.00 0.245±0.00 N/A N/A
ENST00000598006 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.349±0.00 N/A N/A
ENST00000600216 N/A N/A N/A N/A 0.150±0.00 N/A N/A N/A N/A N/A 2.794±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00061U CIL_00061U_0001 CGP 19:6467207-6502848

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000278 TAS mitotic cell cycle
GO:0003924 IEA GTPase activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005829 TAS cytosol
GO:0005874 IEA:IDA microtubule
GO:0005929 IEA cilium
GO:0006184 IEA GTP catabolic process
GO:0006457 TAS protein folding
GO:0007017 IEA microtubule-based process
GO:0033269 IEA internode region of axon
GO:0042995 IEA cell projection
GO:0043025 IEA neuronal cell body
GO:0043209 IEA myelin sheath
GO:0043234 IEA protein complex
GO:0044267 TAS cellular protein metabolic process
GO:0051084 TAS 'de novo' posttranslational protein folding
GO:0051258 IEA protein polymerization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002344 tubb4b tubulin, beta 4B class IVb protein_coding Danio_rerio
ENSMUSG00000062591 Tubb4a tubulin, beta 4A class IVA protein_coding Mus_musculus

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