C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000105171 POP4 9606 + 19:29604017-29617237 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000221770 POP4-002 29606294-29617237 protein_coding
  ENST00000585603 POP4-001 29604017-29615800 protein_coding
  ENST00000586136 POP4-006 29606372-29613239 processed_transcript
  ENST00000586173 POP4-003 29606283-29609242 retained_intron
  ENST00000586420 POP4-012 29606283-29615266 protein_coding
  ENST00000586823 POP4-004 29606298-29613965 nonsense_mediated_decay
  ENST00000587232 POP4-013 29613825-29615703 retained_intron
  ENST00000588551 POP4-008 29606304-29611122 retained_intron
  ENST00000590688 POP4-005 29606321-29612119 protein_coding
  ENST00000591061 POP4-011 29606283-29615436 nonsense_mediated_decay
  ENST00000591824 POP4-007 29606303-29615458 processed_transcript
  ENST00000592749 POP4-010 29611514-29613972 retained_intron
  ENST00000592759 POP4-009 29610252-29615294 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000221770ENST00000585603ENST00000586420ENST00000587232ENST00000591824ENST00000592759
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000221770 1.551±0.00 1.977±0.00 N/A 2.507±0.91 N/A 1.586±0.05 0.941±0.14 2.554±1.76 2.664±0.00 0.856±0.12 0.846±0.01 5.239±1.29 2.903±0.47 3.498±0.64
ENST00000585603 N/A N/A 0.335±0.00 0.449±0.00 N/A N/A N/A N/A N/A N/A 0.234±0.00 N/A N/A N/A
ENST00000586420 N/A N/A 0.757±0.00 3.887±0.00 6.473±2.46 4.493±0.19 N/A N/A N/A N/A 4.051±1.49 11.781±0.00 N/A N/A
ENST00000587232 8.549±0.00 17.739±0.00 N/A 8.568±4.30 12.593±0.00 7.020±4.25 6.105±3.21 7.378±5.43 8.437±5.88 6.548±0.00 5.228±3.35 23.951±10.95 7.760±0.00 14.540±4.70
ENST00000591824 5.606±0.00 11.045±0.00 N/A N/A 4.735±2.36 N/A 3.000±0.00 N/A N/A 5.218±0.00 2.844±0.00 6.661±0.00 N/A 7.760±0.00
ENST00000592759 N/A N/A N/A N/A N/A N/A 6.455±0.00 N/A 8.851±0.00 N/A N/A 17.156±0.00 7.086±2.80 5.222±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TZ CIL_0008TZ_0001 VISTA 19:29588658-30189738

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000171 IBA ribonuclease MRP activity
GO:0000172 IEA ribonuclease MRP complex
GO:0003723 IEA RNA binding
GO:0004526 IBA ribonuclease P activity
GO:0004540 IEA ribonuclease activity
GO:0005515 IPI protein binding
GO:0005655 IEA nucleolar ribonuclease P complex
GO:0006364 IEA rRNA processing
GO:0006379 IEA mRNA cleavage
GO:0008033 IEA tRNA processing
GO:0030677 IEA ribonuclease P complex
GO:0033204 IBA ribonuclease P RNA binding
GO:0090501 IBA RNA phosphodiester bond hydrolysis
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003263 pop4 processing of precursor 4, ribonuclease P/MRP subunit protein_coding Danio_rerio
ENSMUSG00000030423 Pop4 processing of precursor 4, ribonuclease P/MRP family, (S. cerevisiae) protein_coding Mus_musculus

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