C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein S16
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000105193 RPS16 9606 - 19:39433207-39435948 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000251453 RPS16-001 39433207-39435948 protein_coding
  ENST00000339471 RPS16-004 39433207-39435936 protein_coding
  ENST00000595386 RPS16-008 39433253-39434390 retained_intron
  ENST00000599539 RPS16-006 39433207-39435915 protein_coding
  ENST00000599705 RPS16-007 39433260-39435705 protein_coding
  ENST00000601390 RPS16-002 39433223-39435948 retained_intron
  ENST00000601655 RPS16-003 39433217-39435941 protein_coding
  ENST00000602153 RPS16-009 39433223-39433761 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000251453ENST00000599705ENST00000601390ENST00000601655
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000251453 795.000±0.00 1254.200±0.00 13.593±0.00 157.904±151.03 263.478±236.06 710.421±693.40 158.050±147.27 258.313±232.49 200.785±154.94 619.892±605.36 451.364±370.61 1558.559±1288.75 1411.805±729.98 402.990±297.60
ENST00000599705 N/A N/A N/A N/A N/A N/A N/A 146.219±0.00 165.047±0.00 438.150±0.00 206.066±0.00 N/A N/A N/A
ENST00000601390 N/A N/A 0.746±0.00 N/A 1.663±0.00 1.566±0.00 N/A N/A N/A 1.111±0.00 N/A 6.924±5.67 N/A 1.903±0.00
ENST00000601655 437.202±0.00 582.037±0.00 3.102±0.00 47.285±34.78 344.065±0.00 519.177±0.00 N/A 19.387±0.00 N/A 10.794±0.00 137.318±0.00 N/A N/A 387.480±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 IDA RNA binding
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006364 IMP rRNA processing
GO:0006412 NAS:IEA translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0015935 IDA small ribosomal subunit
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022627 IDA cytosolic small ribosomal subunit
GO:0042274 IMP ribosomal small subunit biogenesis
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045487 rps16 ribosomal protein S16 protein_coding Danio_rerio
ENSMUSG00000037563 Rps16 ribosomal protein S16 protein_coding Mus_musculus

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