C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAB3A, member RAS oncogene family
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000105649 RAB3A 9606 - 19:18196784-18204074 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000222256 RAB3A-001 18196784-18204074 protein_coding
  ENST00000464076 RAB3A-002 18196799-18204042 protein_coding
  ENST00000481914 RAB3A-003 18200327-18204012 protein_coding
  ENST00000515410 RAB3A-004 18202338-18204035 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLungOvaryPlacentaTestisENST00000222256ENST00000464076ENST00000481914ENST00000515410
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Lung Ovary Placenta Testis
ENST00000222256 0.766±0.00 1.445±0.00 N/A 92.710±65.88 1.037±0.45 2.915±0.00 3.374±2.76 2.043±0.00 2.470±0.00 12.916±7.33 1.468±0.00 2.379±0.02
ENST00000464076 N/A N/A N/A N/A N/A 1.663±0.00 0.486±0.00 N/A 0.119±0.00 N/A N/A N/A
ENST00000481914 N/A N/A N/A 69.074±0.00 N/A N/A N/A N/A N/A 0.510±0.00 N/A N/A
ENST00000515410 N/A N/A 1.476±0.00 N/A 2.004±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004DR CIL_0004DR_0002 CGP 19:18173162-18196948

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001669 IEA acrosomal vesicle
GO:0001671 IEA ATPase activator activity
GO:0003016 IEA respiratory system process
GO:0003924 IMP:IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005829 IEA cytosol
GO:0005886 TAS plasma membrane
GO:0006184 IDA:IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007005 IEA mitochondrion organization
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0007268 TAS synaptic transmission
GO:0007269 TAS neurotransmitter secretion
GO:0007274 IEA neuromuscular synaptic transmission
GO:0007409 IEA axonogenesis
GO:0008021 ISS synaptic vesicle
GO:0008022 IEA protein C-terminus binding
GO:0009791 IEA post-embryonic development
GO:0014047 TAS glutamate secretion
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016079 ISS synaptic vesicle exocytosis
GO:0016188 IEA synaptic vesicle maturation
GO:0017157 IEA regulation of exocytosis
GO:0030324 IEA lung development
GO:0030424 ISS axon
GO:0031489 IPI myosin V binding
GO:0031630 ISS regulation of synaptic vesicle fusion to presynaptic membrane
GO:0031982 IDA vesicle
GO:0032781 IEA positive regulation of ATPase activity
GO:0036465 ISS synaptic vesicle recycling
GO:0043195 ISS terminal bouton
GO:0043229 IEA intracellular organelle
GO:0043234 IEA protein complex
GO:0045054 TAS constitutive secretory pathway
GO:0045921 TAS positive regulation of exocytosis
GO:0048172 ISS regulation of short-term neuronal synaptic plasticity
GO:0048790 IEA maintenance of presynaptic active zone structure
GO:0050975 IEA sensory perception of touch
GO:0051020 IEA GTPase binding
GO:0051117 IEA ATPase binding
GO:0051602 IEA response to electrical stimulus
GO:0060201 TAS clathrin-sculpted acetylcholine transport vesicle membrane
GO:0060203 TAS clathrin-sculpted glutamate transport vesicle membrane
GO:0061202 TAS clathrin-sculpted gamma-aminobutyric acid transport vesicle membrane
GO:0070083 TAS clathrin-sculpted monoamine transport vesicle membrane
GO:1903307 IMP positive regulation of regulated secretory pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043835 rab3ab RAB3A, member RAS oncogene family, b protein_coding Danio_rerio
ENSMUSG00000031840 Rab3a RAB3A, member RAS oncogene family protein_coding Mus_musculus

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