C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SURP and G patch domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000105705 SUGP1 9606 - 19:19276018-19320844 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000247001 SUGP1-001 19276511-19320844 protein_coding
  ENST00000535070 SUGP1-012 19301659-19320509 nonsense_mediated_decay
  ENST00000585444 SUGP1-008 19306043-19320509 nonsense_mediated_decay
  ENST00000585763 SUGP1-013 19297171-19320509 processed_transcript
  ENST00000586387 SUGP1-014 19297182-19303686 retained_intron
  ENST00000587119 SUGP1-002 19276514-19320509 nonsense_mediated_decay
  ENST00000587716 SUGP1-016 19303725-19320498 processed_transcript
  ENST00000588580 SUGP1-011 19305646-19320470 retained_intron
  ENST00000588731 SUGP1-003 19276513-19320509 nonsense_mediated_decay
  ENST00000589144 SUGP1-004 19276018-19303828 nonsense_mediated_decay
  ENST00000590439 SUGP1-010 19302330-19320509 protein_coding
  ENST00000591007 SUGP1-005 19276513-19302455 retained_intron
  ENST00000591350 SUGP1-007 19303351-19320509 nonsense_mediated_decay
  ENST00000592188 SUGP1-006 19276515-19281492 retained_intron
  ENST00000606725 SUGP1-015 19303724-19320497 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000247001ENST00000587119ENST00000587716ENST00000588731ENST00000590439ENST00000591007
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000247001 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.490±0.00
ENST00000587119 N/A N/A N/A N/A N/A 0.955±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587716 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 26.382±0.00 25.000±0.00 58.919±0.00
ENST00000588731 N/A N/A 0.869±0.00 2.600±0.00 N/A 1.209±0.00 0.574±0.00 0.479±0.00 N/A N/A N/A N/A N/A N/A
ENST00000590439 N/A N/A N/A N/A N/A N/A N/A 2.307±0.00 N/A N/A N/A N/A N/A N/A
ENST00000591007 15.347±0.00 22.707±0.00 N/A 15.448±0.00 15.335±0.00 13.085±0.00 13.906±0.00 15.103±0.00 8.565±0.00 9.667±0.00 21.345±0.00 23.098±5.76 13.588±2.34 39.578±5.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004NS CIL_0004NS_0002 CGP 19:19276018-19358755

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0005681 IEA spliceosomal complex
GO:0006396 IEA RNA processing
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075936 sugp1 SURP and G patch domain containing 1 protein_coding Danio_rerio
ENSMUSG00000011306 Sugp1 SURP and G patch domain containing 1 protein_coding Mus_musculus

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