C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: H2A histone family, member V
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000105968 H2AFV 9606 - 7:44826791-44848083 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000222690 H2AFV-001 44826791-44848077 protein_coding
  ENST00000308153 H2AFV-002 44834228-44848063 protein_coding
  ENST00000349299 H2AFV-004 44834228-44848021 protein_coding
  ENST00000350771 H2AFV-003 44834228-44848076 protein_coding
  ENST00000381124 H2AFV-007 44834239-44848080 protein_coding
  ENST00000437072 H2AFV-005 44829897-44848082 protein_coding
  ENST00000446531 H2AFV-006 44834925-44848083 protein_coding
  ENST00000521529 H2AFV-008 44834310-44848040 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000222690ENST00000308153ENST00000349299ENST00000350771ENST00000521529
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000222690 5.940±0.00 10.158±0.00 N/A 23.351±0.00 10.847±0.00 10.106±0.00 9.490±0.00 11.622±0.00 9.806±0.00 10.043±0.00 9.559±3.40 10.852±2.88 5.726±0.59 8.721±0.64
ENST00000308153 N/A N/A 6.389±0.00 12.336±0.00 18.229±8.04 27.124±15.05 N/A 10.766±0.00 N/A 20.778±10.14 N/A 34.819±15.49 33.130±9.42 31.344±10.18
ENST00000349299 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.869±0.00 N/A N/A N/A
ENST00000350771 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 38.062±0.00 18.649±0.00 N/A
ENST00000521529 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 52.124±0.00 20.667±0.00 34.776±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000SB CIL_0000SB_0001 CGP 7:44796680-44848083
CIL_0007BS CIL_0007BS_0002 CGP 7:44826791-44885361

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000786 IEA nucleosome
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0005634 IDA:IEA nucleus
GO:0008150 ND biological_process
GO:0046982 IEA protein heterodimerization activity
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042502 h2afvb H2A histone family, member Vb protein_coding Danio_rerio
ENSDARG00000068820 h2afva H2A histone family, member Va protein_coding Danio_rerio
ENSMUSG00000041126 H2afv H2A histone family, member V protein_coding Mus_musculus

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