C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PDGFA associated protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000106244 PDAP1 9606 - 7:99392048-99408829 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000350498 PDAP1-001 99394963-99408829 protein_coding
  ENST00000426447 PDAP1-002 99396523-99408590 nonsense_mediated_decay
  ENST00000488214 PDAP1-003 99403317-99404942 retained_intron
  ENST00000496335 PDAP1-004 99392048-99397960 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000350498ENST00000426447
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000350498 47.421±0.00 90.184±0.00 4.672±0.00 6.794±0.00 25.935±16.36 8.773±0.00 13.036±10.19 21.324±17.01 12.500±7.38 36.879±0.00 25.348±17.86 70.872±43.11 57.279±6.18 33.804±0.00
ENST00000426447 N/A N/A N/A N/A N/A N/A N/A 10.132±0.00 10.643±0.00 N/A N/A 212.331±0.00 89.114±0.00 46.976±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005L5 CIL_0005L5_0002 CGP 7:99325898-99394801
CIL_0004TJ CIL_0004TJ_0001 CGP 7:99374249-99408829
CIL_0005LD CIL_0005LD_0002 CGP 7:99392048-99419616

Gene Ontology
GO IDEvidence TypeGO Description
GO:0007165 TAS signal transduction
GO:0008283 TAS cell proliferation
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002967 pdap1b pdgfa associated protein 1b protein_coding Danio_rerio
ENSMUSG00000029623 Pdap1 PDGFA associated protein 1 protein_coding Mus_musculus

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