C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tRNA aspartic acid methyltransferase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000107614 TRDMT1 9606 - 10:17142254-17202054 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000313936 TRDMT1-003 17157444-17174660 protein_coding
  ENST00000354631 TRDMT1-006 17142254-17201672 nonsense_mediated_decay
  ENST00000377799 TRDMT1-001 17146737-17201682 protein_coding
  ENST00000424636 TRDMT1-008 17159153-17201580 nonsense_mediated_decay
  ENST00000436968 TRDMT1-004 17159153-17174660 protein_coding
  ENST00000451253 TRDMT1-010 17171820-17200567 processed_transcript
  ENST00000452380 TRDMT1-009 17151414-17169419 processed_transcript
  ENST00000479046 TRDMT1-011 17171908-17202054 processed_transcript
  ENST00000486947 TRDMT1-012 17171556-17201428 processed_transcript
  ENST00000488990 TRDMT1-005 17152935-17201657 protein_coding
  ENST00000495022 TRDMT1-007 17148916-17201851 nonsense_mediated_decay
  ENST00000525762 TRDMT1-002 17159153-17201580 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000313936ENST00000354631ENST00000377799ENST00000452380ENST00000486947ENST00000488990
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000313936 N/A N/A N/A N/A N/A N/A N/A N/A 0.198±0.00 N/A N/A N/A N/A N/A
ENST00000354631 0.178±0.00 0.823±0.00 N/A 0.041±0.00 0.356±0.00 N/A 0.167±0.00 0.163±0.12 0.098±0.08 0.350±0.00 0.008±0.00 0.596±0.16 0.121±0.03 0.298±0.00
ENST00000377799 0.360±0.00 0.398±0.00 0.201±0.00 0.283±0.00 0.471±0.00 0.223±0.00 0.298±0.00 0.693±0.00 0.108±0.00 0.295±0.12 0.112±0.00 0.891±0.21 0.421±0.15 0.618±0.11
ENST00000452380 N/A N/A N/A 0.270±0.09 N/A 0.215±0.00 N/A N/A N/A N/A N/A N/A 0.165±0.00 0.537±0.00
ENST00000486947 N/A N/A N/A N/A N/A 1.085±0.00 N/A N/A N/A N/A N/A N/A N/A 0.635±0.00
ENST00000488990 N/A N/A N/A N/A N/A N/A N/A 0.458±0.00 N/A 0.219±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000IU CIL_0000IU_0002 CGP 10:16823964-17202054
CIL_00046B CIL_00046B_0002 CGP 10:17142254-17237593

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001975 IEA response to amphetamine
GO:0003677 IEA DNA binding
GO:0003723 IEA RNA binding
GO:0003886 TAS DNA (cytosine-5-)-methyltransferase activity
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0008168 IEA methyltransferase activity
GO:0008175 IDA tRNA methyltransferase activity
GO:0030488 IDA tRNA methylation
GO:0032259 IEA methylation
GO:0090116 TAS C-5 methylation of cytosine

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000034518 trdmt1 tRNA aspartic acid methyltransferase 1 protein_coding Danio_rerio
ENSMUSG00000026723 Trdmt1 tRNA aspartic acid methyltransferase 1 protein_coding Mus_musculus

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