C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: soc-2 suppressor of clear homolog (C. elegans)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000108061 SHOC2 9606 + 10:110919547-111013667 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000265277 SHOC2-201 110964125-111013664 protein_coding
  ENST00000369452 SHOC2-001 110919547-111013667 protein_coding
  ENST00000451838 SHOC2-002 110964851-111013666 protein_coding
  ENST00000480155 SHOC2-005 110919593-110964524 processed_transcript
  ENST00000489390 SHOC2-003 110919603-111011670 processed_transcript
  ENST00000489783 SHOC2-004 110920003-110964729 processed_transcript
  ENST00000497305 SHOC2-006 110965032-110985922 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000265277ENST00000369452ENST00000451838ENST00000489783
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000265277 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.654±0.00 4.174±0.00
ENST00000369452 13.550±0.00 5.989±0.00 3.742±0.00 11.601±0.92 11.425±0.41 10.084±0.21 5.410±1.12 5.356±1.65 6.004±3.14 8.595±3.34 4.471±3.21 7.921±2.88 3.692±0.63 12.462±3.14
ENST00000451838 N/A 3.765±0.00 N/A N/A 2.165±0.00 N/A N/A N/A 1.089±0.00 N/A N/A 7.585±0.00 1.763±0.38 8.294±3.07
ENST00000489783 N/A N/A 2.207±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q9 CIL_0008Q9_0001 VISTA 10:110384599-110985964
CIL_0006FA CIL_0006FA_0001 CGP 10:110919547-111080907

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000164 IDA protein phosphatase type 1 complex
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0007265 NAS Ras protein signal transduction
GO:0008543 NAS fibroblast growth factor receptor signaling pathway
GO:0019888 TAS protein phosphatase regulator activity
GO:0019903 IDA protein phosphatase binding
GO:0046579 IMP positive regulation of Ras protein signal transduction
GO:0050790 TAS regulation of catalytic activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040853 shoc2 soc-2 suppressor of clear homolog (C. elegans) protein_coding Danio_rerio
ENSMUSG00000024976 Shoc2 soc-2 (suppressor of clear) homolog (C. elegans) protein_coding Mus_musculus

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