C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transcription factor A, mitochondrial
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000108064 TFAM 9606 + 10:58385022-58399221 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000373895 TFAM-004 58385434-58395288 protein_coding
  ENST00000373899 TFAM-003 58385345-58395184 processed_transcript
  ENST00000395377 TFAM-001 58385604-58394539 protein_coding
  ENST00000487519 TFAM-002 58385022-58399221 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000373895ENST00000373899ENST00000395377ENST00000487519
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000373895 4.181±0.00 4.116±0.00 2.194±1.20 1.139±0.00 2.511±0.00 3.411±2.23 3.777±2.38 2.905±0.00 2.005±0.54 3.220±0.00 4.277±1.46 4.293±1.33 6.546±0.00
ENST00000373899 N/A N/A N/A N/A 4.565±0.00 N/A 1.859±0.00 N/A N/A N/A 4.547±0.00 4.948±0.00 20.337±3.52
ENST00000395377 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.917±0.00 7.835±0.00 40.824±0.00
ENST00000487519 3.596±0.00 4.948±0.00 2.406±0.33 3.396±0.85 3.291±0.33 1.514±1.00 2.900±1.39 3.708±0.58 2.307±0.37 0.938±0.46 4.121±0.29 3.108±0.77 3.971±0.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00018V CIL_00018V_0002 CGP 10:58334975-58399221

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IDA chromatin binding
GO:0003700 IMP sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005739 IDA mitochondrion
GO:0005759 TAS mitochondrial matrix
GO:0006261 TAS DNA-dependent DNA replication
GO:0006356 TAS regulation of transcription from RNA polymerase I promoter
GO:0006390 IMP transcription from mitochondrial promoter
GO:0006391 IDA transcription initiation from mitochondrial promoter
GO:0008301 IDA DNA binding, bending
GO:0010467 TAS gene expression
GO:0031072 IEA heat shock protein binding
GO:0033108 IEA mitochondrial respiratory chain complex assembly
GO:0042645 IDA mitochondrial nucleoid
GO:0044822 IDA poly(A) RNA binding
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0070363 IDA mitochondrial light strand promoter sense binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063145 tfam transcription factor A, mitochondrial protein_coding Danio_rerio
ENSMUSG00000003923 Tfam transcription factor A, mitochondrial protein_coding Mus_musculus

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