C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: keratin 23 (histone deacetylase inducible)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000108244 KRT23 9606 - 17:40922696-40937634 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000209718 KRT23-001 40922696-40937420 protein_coding
  ENST00000436344 KRT23-005 40922700-40937450 protein_coding
  ENST00000462312 KRT23-002 40922700-40937584 nonsense_mediated_decay
  ENST00000485751 KRT23-004 40936448-40937486 protein_coding
  ENST00000494691 KRT23-003 40928238-40937545 nonsense_mediated_decay
  ENST00000582283 KRT23-008 40936742-40937577 processed_transcript
  ENST00000582754 KRT23-006 40925161-40936835 retained_intron
  ENST00000584517 KRT23-010 40929676-40936390 protein_coding
  ENST00000585006 KRT23-009 40936832-40937634 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000209718ENST00000436344ENST00000462312ENST00000494691ENST00000582754ENST00000584517ENST00000585006
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000209718 0.270±0.00 N/A N/A N/A 6.177±0.00 0.085±0.00 N/A 0.076±0.00 0.066±0.02 3.637±0.00 N/A 6.108±3.41 82.836±5.36 6.830±0.00
ENST00000436344 0.062±0.00 N/A N/A N/A 0.628±0.26 N/A N/A N/A N/A 0.464±0.00 N/A 17.877±25.01 77.829±0.00 15.366±5.03
ENST00000462312 N/A N/A 0.031±0.00 0.041±0.00 N/A N/A 0.009±0.00 0.104±0.00 0.152±0.00 N/A 0.029±0.00 N/A N/A N/A
ENST00000494691 N/A N/A N/A N/A N/A N/A N/A 0.154±0.00 N/A N/A N/A N/A N/A N/A
ENST00000582754 N/A 0.043±0.00 N/A N/A 0.178±0.00 N/A N/A 0.216±0.00 N/A N/A N/A 15.893±0.00 25.606±0.00 N/A
ENST00000584517 N/A N/A N/A 0.078±0.00 N/A 0.095±0.00 N/A N/A N/A 0.514±0.00 N/A N/A N/A N/A
ENST00000585006 N/A N/A N/A N/A N/A N/A N/A 0.138±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000TN CIL_0000TN_0005 CGP 17:40875941-40937634
CIL_0000TM CIL_0000TM_0003 CGP 17:40922696-40966892

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005882 IEA intermediate filament

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019365 zgc:110712 zgc:110712 protein_coding Danio_rerio
ENSDARG00000036830 KRT23 (1 of 2) protein_coding Danio_rerio
ENSDARG00000044973 KRT23 (2 of 2) protein_coding Danio_rerio
ENSMUSG00000006777 Krt23 keratin 23 protein_coding Mus_musculus

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