C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pyridoxamine 5'-phosphate oxidase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000108439 PNPO 9606 + 17:47941506-47948288 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000225573 PNPO-001 47941571-47948288 protein_coding
  ENST00000434554 PNPO-002 47941571-47947230 protein_coding
  ENST00000582171 PNPO-003 47941625-47947222 nonsense_mediated_decay
  ENST00000583245 PNPO-004 47941571-47945987 nonsense_mediated_decay
  ENST00000583599 PNPO-008 47941506-47946377 protein_coding
  ENST00000584061 PNPO-005 47941571-47945912 nonsense_mediated_decay
  ENST00000584806 PNPO-006 47945398-47946876 retained_intron
  ENST00000585320 PNPO-007 47941618-47946749 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000225573ENST00000434554ENST00000582171ENST00000583599
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000225573 2.459±0.00 3.931±0.00 3.031±0.00 4.035±0.00 2.204±0.00 5.299±0.00 3.216±0.00 3.549±1.04 2.198±0.00 4.817±0.00 4.396±0.00
ENST00000434554 N/A N/A N/A N/A N/A N/A N/A N/A 6.767±0.00 N/A N/A
ENST00000582171 N/A N/A N/A N/A N/A N/A N/A N/A 7.646±0.00 N/A N/A
ENST00000583599 N/A N/A N/A N/A N/A 28.317±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RQ CIL_0007RQ_0001 VISTA 17:47700006-48306250
CIL_0007WA CIL_0007WA_0001 VISTA 17:47751636-48352675
CIL_00097B CIL_00097B_0001 VISTA 17:47849190-48450331
CIL_0004N0 CIL_0004N0_0002 CGP 17:47941506-47957878

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004733 TAS:IEA pyridoxamine-phosphate oxidase activity
GO:0005829 TAS cytosol
GO:0006766 TAS vitamin metabolic process
GO:0006767 TAS water-soluble vitamin metabolic process
GO:0008615 IEA pyridoxine biosynthetic process
GO:0010181 IEA FMN binding
GO:0016491 IEA oxidoreductase activity
GO:0016638 IEA oxidoreductase activity, acting on the CH-NH2 group of donors
GO:0042816 TAS vitamin B6 metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0055114 IEA oxidation-reduction process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017612 pnpo pyridoxine 5'-phosphate oxidase protein_coding Danio_rerio
ENSMUSG00000018659 Pnpo pyridoxine 5'-phosphate oxidase protein_coding Mus_musculus

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