C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CDK5 regulatory subunit associated protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000108465 CDK5RAP3 9606 + 17:47967810-47981774 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000338399 CDK5RAP3-001 47971041-47981741 protein_coding
  ENST00000536708 CDK5RAP3-010 47970534-47981772 protein_coding
  ENST00000577442 CDK5RAP3-020 47971018-47974556 retained_intron
  ENST00000577664 CDK5RAP3-034 47971122-47975524 nonsense_mediated_decay
  ENST00000577802 CDK5RAP3-029 47976628-47978051 retained_intron
  ENST00000578018 CDK5RAP3-012 47971122-47974447 protein_coding
  ENST00000578134 CDK5RAP3-024 47971143-47975631 processed_transcript
  ENST00000578525 CDK5RAP3-025 47971122-47975552 nonsense_mediated_decay
  ENST00000578663 CDK5RAP3-031 47978550-47981741 processed_transcript
  ENST00000578733 CDK5RAP3-015 47971122-47973810 retained_intron
  ENST00000578996 CDK5RAP3-032 47981107-47981774 retained_intron
  ENST00000579175 CDK5RAP3-037 47971123-47976771 protein_coding
  ENST00000579605 CDK5RAP3-022 47971078-47975266 nonsense_mediated_decay
  ENST00000579632 CDK5RAP3-011 47967810-47975337 protein_coding
  ENST00000579780 CDK5RAP3-019 47971151-47974575 retained_intron
  ENST00000579853 CDK5RAP3-014 47971008-47974409 retained_intron
  ENST00000580287 CDK5RAP3-008 47971127-47981772 retained_intron
  ENST00000580391 CDK5RAP3-003 47971156-47981734 nonsense_mediated_decay
  ENST00000580670 CDK5RAP3-009 47971362-47981757 nonsense_mediated_decay
  ENST00000581160 CDK5RAP3-023 47971113-47975098 processed_transcript
  ENST00000581662 CDK5RAP3-038 47973659-47974583 retained_intron
  ENST00000581708 CDK5RAP3-021 47971076-47975266 processed_transcript
  ENST00000582114 CDK5RAP3-030 47976461-47980709 retained_intron
  ENST00000582275 CDK5RAP3-013 47971122-47974541 retained_intron
  ENST00000582482 CDK5RAP3-007 47979217-47981773 retained_intron
  ENST00000583182 CDK5RAP3-036 47971132-47974789 retained_intron
  ENST00000583352 CDK5RAP3-017 47971151-47975650 protein_coding
  ENST00000583363 CDK5RAP3-027 47971135-47974681 nonsense_mediated_decay
  ENST00000583697 CDK5RAP3-033 47976722-47981768 protein_coding
  ENST00000584042 CDK5RAP3-018 47971211-47974561 retained_intron
  ENST00000584063 CDK5RAP3-004 47971104-47981772 retained_intron
  ENST00000584168 CDK5RAP3-006 47971362-47981742 retained_intron
  ENST00000584186 CDK5RAP3-016 47971165-47973855 retained_intron
  ENST00000584525 CDK5RAP3-026 47971050-47974136 retained_intron
  ENST00000584592 CDK5RAP3-035 47971122-47974031 processed_transcript
  ENST00000584991 CDK5RAP3-002 47971049-47981741 nonsense_mediated_decay
  ENST00000585163 CDK5RAP3-005 47971125-47981768 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000338399ENST00000580287ENST00000580391ENST00000580670ENST00000582114ENST00000583697ENST00000584063ENST00000584991ENST00000585163
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000338399 14.734±0.00 8.440±0.00 N/A 10.438±6.71 10.443±7.75 8.353±0.00 6.959±0.00 18.015±0.00 21.099±0.00 7.262±4.22 N/A 25.702±16.71 18.249±3.10 27.671±10.36
ENST00000580287 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.696±0.00
ENST00000580391 N/A 8.361±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580670 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.130±0.00 N/A N/A N/A
ENST00000582114 N/A N/A N/A N/A 13.015±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583697 N/A 16.696±0.00 N/A N/A N/A 11.002±0.00 N/A N/A N/A N/A N/A N/A N/A 12.854±0.00
ENST00000584063 N/A 12.738±0.00 2.162±0.00 N/A 4.351±1.50 2.830±0.00 N/A 10.747±0.00 1.897±0.00 4.550±1.37 N/A 30.895±27.91 3.726±0.00 19.879±15.62
ENST00000584991 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.844±0.00 N/A N/A N/A
ENST00000585163 N/A N/A N/A N/A N/A N/A 0.935±0.00 N/A 2.175±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RQ CIL_0007RQ_0001 VISTA 17:47700006-48306250
CIL_0007WA CIL_0007WA_0001 VISTA 17:47751636-48352675
CIL_00097B CIL_00097B_0001 VISTA 17:47849190-48450331
CIL_0004MZ CIL_0004MZ_0002 CGP 17:47951967-47981774

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000079 ISS regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0005515 IPI protein binding
GO:0007420 NAS brain development
GO:0016020 IDA membrane
GO:0019901 NAS protein kinase binding
GO:0045664 NAS regulation of neuron differentiation
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0071569 IDA protein ufmylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045092 cdk5rap3 CDK5 regulatory subunit associated protein 3 protein_coding Danio_rerio
ENSMUSG00000018669 Cdk5rap3 CDK5 regulatory subunit associated protein 3 protein_coding Mus_musculus

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